Structure-Guided Discovery of Subtype Selective SIRT6 Inhibitors with a β-Carboline Skeleton for the Treatment of

Chaowei Liang1,2, Siyu Wang1,2, Dongyan Feng1,2

  • 1Key Laboratory of Structure-Based Drug Design & Discovery, Ministry of Education, Shenyang Pharmaceutical University, 103 Wenhua Road, Shenyang 110016, P. R. China.

PubMed

Insights

Researchers identified a novel compound, 10d, that inhibits SIRT6, a protein promoting breast cancer drug resistance. This compound effectively suppressed tumor growth and invasion in preclinical models, offering a promising new therapeutic strategy.

Area of Science:

  • Biochemistry
  • Molecular Biology
  • Oncology

Background:

  • Sirtuin 6 (SIRT6) is implicated in promoting breast cancer progression and drug resistance.
  • SIRT6 enhances cancer cell survival by reinforcing DNA damage repair pathways.

Purpose of the Study:

  • To identify novel SIRT6 inhibitors for breast cancer treatment.
  • To investigate the therapeutic potential of SIRT6 inhibition in preclinical models.

Main Methods:

  • High-throughput virtual screening and biochemical assays were employed to identify SIRT6 inhibitors.
  • Structure-guided optimization led to the synthesis and evaluation of novel β-carboline derivatives.
  • In vitro assays assessed compound efficacy on breast cancer cell lines (MCF-7), and in vivo studies evaluated antitumor effects.

Main Results:

  • Hit 14, a novel β-carboline derivative, was identified as a potent SIRT6 inhibitor.
  • Compound 10d demonstrated potent SIRT6 deacetylase inhibition (IC50 = 5.81 μM) with high subtype selectivity (>27-fold).
  • 10d suppressed breast cancer cell proliferation, migration, invasion, induced apoptosis, and showed in vivo efficacy by disrupting DNA damage repair.

Conclusions:

  • Compound 10d is a potent and selective SIRT6 inhibitor with demonstrated preclinical efficacy against breast cancer.
  • Targeting SIRT6 represents a promising therapeutic strategy for overcoming drug resistance and treating breast cancer.