Furopyridine Derivatives as Potent Inhibitors of the Wild Type, L858R/T790M, and L858R/T790M/C797S EGFR
Duangjai Todsaporn1, Alexander Zubenko2, Victor G Kartsev3
1Center of Excellence in Biocatalyst and Sustainable Biotechnology, Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand.
Abstract:
The treatment of patients with nonsmall cell lung cancer (NSCLC) using epidermal growth factor receptor (EGFR) inhibitors is complicated by drug-sensitive activating L858R/T790M and L858R/T790M/C797S mutations. To overcome drug resistance, a series of furopyridine (PD) compounds were virtually screened to identify potent EGFR inhibitors using molecular docking and molecular dynamics (MD) simulations based on the solvated interaction energy (SIE) method. Several PD compounds identified from virtual screening demonstrated the potential to suppress both wild-type and mutant forms of EGFR, with IC50 values in the nanomolar range. Among these, PD18 and PD56 exhibited highly potent inhibitory activity against both wild-type and mutant forms of EGFR, surpassing the efficacy of known drugs. Additionally, both PD compounds were cytotoxic to NSCLC cell lines (A549 and H1975) while being nontoxic to normal cell lines (Vero). The interaction mechanisms of both PD compounds complexed with wild-type and mutant forms of EGFR were elucidated through 500 ns molecular dynamics simulations. The predicted binding affinity from molecular mechanics/Poisson-Boltzmann surface area (MM/PBSA) correlated well with the experimental binding affinity derived from IC50 values. Furthermore, it was observed that van der Waals interactions, rather than electrostatic interactions, played a significant role in interacting with EGFR's active site. The strong inhibitory activity against EGFR was attributed to two key residues, M793 and S797, via hydrogen bonding, corresponding with lower solvent accessibility and a higher number of atomic contacts. Therefore, these potent compounds could be developed as promising drugs targeting both wild-type and mutant EGFR for the treatment of NSCLC.
Insights
New furopyridine compounds, PD18 and PD56, show potent inhibition against wild-type and mutant epidermal growth factor receptor (EGFR), offering a promising strategy for nonsmall cell lung cancer (NSCLC) treatment.
Area of Science:
- Medicinal Chemistry
- Computational Chemistry
- Oncology
Background:
- Nonsmall cell lung cancer (NSCLC) treatment faces challenges due to drug resistance mutations in the epidermal growth factor receptor (EGFR).
- Existing EGFR inhibitors are often ineffective against specific mutations like L858R/T790M and L858R/T790M/C797S.
Purpose of the Study:
- To identify novel potent inhibitors of both wild-type and mutant EGFR using computational methods.
- To overcome drug resistance in NSCLC by developing new therapeutic agents.
Main Methods:
- Virtual screening of furopyridine (PD) compounds using molecular docking and molecular dynamics (MD) simulations.
- Solvated Interaction Energy (SIE) and Molecular Mechanics/Poisson-Boltzmann Surface Area (MM/PBSA) methods were employed.
- In vitro cytotoxicity assays on NSCLC and normal cell lines.
Main Results:
- Several PD compounds demonstrated nanomolar inhibitory activity against wild-type and mutant EGFR.
- PD18 and PD56 exhibited superior potency compared to existing drugs and were cytotoxic to NSCLC cells (A549, H1975) but not normal cells (Vero).
- MD simulations revealed strong van der Waals interactions and hydrogen bonding with key residues (M793, S797) in the EGFR active site.
Conclusions:
- PD18 and PD56 are potent inhibitors of wild-type and mutant EGFR, showing promise for NSCLC therapy.
- These compounds exhibit favorable drug-like properties and specific cytotoxicity against cancer cells.
- The identified interaction mechanisms provide a basis for further drug development targeting resistant EGFR mutations.
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