Related Experiment Video
Updated: Jun 5, 2025

Author Spotlight: Advancing Cellular and Protein Engineering to Control Biological Functions and Develop Novel Therapies
Published on: September 27, 2024
Theoretical Insights on the Excited State Deactivation Mechanism in Protonated Adenosine
Mohammad Salehi1, Pierre Çarçabal2, Reza Omidyan1
1Department of Chemistry, University of Isfahan, 81746-73441 Isfahan, Iran.
Abstract:
We present herein our computational exploration of the conformational landscape and photophysical properties of protonated adenosine (AdoH+). Several different protonated isomers and conformers have been considered and their relevant photophysical properties have been addressed. From our ab initio quantum computational results, an S1/S0 conical intersection (CI) has been located for all considered conformers, providing a significant route for the ultrafast deactivation mechanism of the S1 excited state of AdoH+. Our results are also supported by nonadiabatic dynamics (NAD) simulation results indicating the S1 excited state lifetime of 240-300 fs for the two most stable conformers of AdoH+ (i.e., the most stable syn- and anti-N3 protonated tautomers), which is comparable with protonated adenine, reported in the literature. The results confirm the ultrafast deactivation mechanism as well as photostability in nucleosides in protonated form.
More Related Videos
Related Concept Videos
Hydrolysis of ATP
If one phosphate group is removed, a molecule of ADP—adenosine diphosphate—remains, along with inorganic phosphate. ADP can be further hydrolyzed to AMP—adenosine...
Deactivation Processes: Jablonski Diagram
ATP Energy Storage and Release
One example of energy coupling using ATP involves a...
Adrenergic Agonists: Chemistry and Structure-Activity Relationship
Aromatic ring substitutions: Substituting the aromatic ring with –OH groups at positions 3 and 4 yields catecholamines (e.g., epinephrine), which have a high affinity for adrenoceptors. Hydrogen bonding between –OH groups and receptors enhances adrenergic activity.
Separation of...
Indirect-Acting Cholinergic Agonists: Mechanism of Action
Reversible inhibitors like edrophonium bind to a specific part of the enzyme called the anionic catalytic site. They form noncovalent bonds, which means they are not strongly attached to the enzyme. This creates a temporary and less stable enzyme–inhibitor complex,...
Indirect-Acting Cholinergic Agonists: Chemistry and Structure-Activity Relationship
Reversible inhibitors display short to medium durations of action. Short-acting agents include simple alcohols with...

