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Unveiling New Clinical and Genetic Insights in Ultra-Rare Intellectual Disability Phenotypes: A Study of a Turkish
Ayberk Turkyilmaz1, Safiye Gunes Sager2, Kerem Terali3
1Department of Medical Genetics, Karadeniz Technical University Faculty of Medicine, Trabzon, Türkiye.
Insights
This study identified 28 genetic variations in 23 genes in Turkish pediatric patients with ultrarare intellectual disability (ID). Novel findings enhance understanding of ID
Area of Science:
- Genetics
- Pediatrics
- Neurology
Background:
- Intellectual disability (ID) is a neurodevelopmental disorder characterized by impaired reasoning and adaptive behaviors before age 18.
- Ultrarare ID phenotypes are exceptionally uncommon, with fewer than 20 cases reported in the literature.
- Understanding the genetic basis of ultrarare ID is crucial for diagnosis and management.
Purpose of the Study:
- To present the clinical and genetic data of Turkish pediatric patients with ultrarare intellectual disability.
- To identify novel genetic variations and expand the genotypic and phenotypic spectrum of ultrarare ID.
- To contribute to a better understanding of the molecular mechanisms underlying these rare conditions.
Main Methods:
- Whole exome sequencing (WES) was performed on 29 pediatric patients from 26 families diagnosed with ultrarare ID.
- Genetic variations were analyzed, including missense, nonsense, frameshift, splice-site, and gross exonic deletions.
- Copy number variations (CNVs) analysis and in silico modeling were utilized to assess the impact of variations on protein structure.
Main Results:
- A total of 28 different genetic variations were identified across 23 distinct genes in the cohort.
- Nine (32%) of the detected variations were novel, expanding the known genetic landscape of ultrarare ID.
- Consanguinity was present in 55% of families, suggesting a potential role in recessive inheritance patterns.
Conclusions:
- This study provides valuable clinical and genetic insights into 23 different ultrarare ID phenotypes.
- The identification of novel variations contributes to a more comprehensive understanding of the genotypic and phenotypic spectrum of ID.
- The findings aid in clarifying clinical manifestations and molecular mechanisms of rare intellectual disability syndromes.
Abstract:
Intellectual disability (ID) is defined as a severe impairment in reasoning, learning, and problem-solving abilities along with adaptive behavior that occurs before the age of 18 years. The present study aimed to present the clinical and genetic data of a cohort of Turkish pediatric patients diagnosed with the ultrarare (which only up to 20 cases having been reported in the relevant literature thus far) ID phenotype. A total of 29 patients from 26 different families, who were diagnosed with ultrarare ID upon whole exome sequencing (WES) analysis, were included in the study. Of the patients included in the study, 18 (62%) were male and 11 (38%) were female. There was consanguinity between parents in 16 families (55%). With respect to the ID phenotype, three families had cases with a similar phenotype, while 23 families (88%) had sporadic cases. Upon molecular analysis, 28 different variations in 23 different genes were noted. Of the variations detected, 15 were missense, 6 nonsense, 4 frameshift, 2 splice-site, and 1 gross exonic deletion. Nine (32%) variations were novel among the detected variations. This study summarized the clinical and genetic features of 23 different ultrarare ID phenotypes by means of WES study, including copy number variations (CNVs) analysis. Novel clinical and genetic findings in the present study contribute to a better understanding of the genotypic and phenotypic spectrum. The effects of some rare variations on protein structure were revealed by means of in silico modeling. Newly described cases with ultrarare phenotypes help achieve a clearer description of the clinical and genetic manifestations of the syndromes and gain a better understanding of the molecular mechanisms.
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