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Updated: Jul 16, 2026

Identification of Rare Bacterial Pathogens by 16S rRNA Gene Sequencing and MALDI-TOF MS
Published on: July 11, 2016
Tsukamurella conjunctivitidis peritonitis diagnosed by 16S rRNA gene sequencing in a patient undergoing peritoneal
Masato Habuka1, Kosuke Matsunaga2, Asa Ogawa2
1Division of Nephrology, Niigata Prefectural Shibata Hospital, 1-2-8 Honcho, Shibata, Niigata, 957-8588, Japan. lucky_palace1010@yahoo.co.jp.
Abstract:
Peritoneal dialysis (PD)-associated peritonitis remains a serious and life-threatening complication in patients undergoing PD. Majority of peritonitis cases are caused by bacteria, with coagulase-negative Staphylococcus being the most common cause. Tsukamurella species are obligate aerobic gram-positive bacilli found in various environments; however, peritonitis caused by Tsukamurella species in association with PD is rare, with few reports of infections caused by T. conjunctivitidis, including PD-associated peritonitis. We describe a rare case of peritonitis caused by T. conjunctivitidis in a patient undergoing PD. A 62-year-old man undergoing PD was referred to our hospital for fever and abdominal pain lasting for 4 days and was diagnosed with PD-associated peritonitis based on abdominal pain, cloudy effluent, elevated white blood cell count in the peritoneal fluid, and presence of gram-positive rods in the effluent culture. Yellow-grayish, dry, membrane-like colonies were observed on a blood agar plate. The isolated strain was identified as T. conjunctivitidis through 16S rRNA gene sequencing. Because the PD-associated peritonitis was refractory to antibiotics, the PD catheter was removed, and the patient was switched to hemodialysis on day 21 of admission. Clinicians should consider peritonitis caused by T. conjunctivitidis as a differential diagnosis in cases where diagnosis using routine examination is challenging. Notably, 16S rRNA gene sequencing is a useful diagnostic tool for identifying T. conjunctivitidis. Further analyses of similar cases are required to understand the characteristics of such infections and establish adequate diagnostic methods and treatment regimens.
Insights
Peritonitis from Tsukamurella conjunctivitidis is a rare but serious complication in peritoneal dialysis (PD) patients. This case highlights the need for advanced diagnostics like 16S rRNA gene sequencing for challenging infections.
Area of Science:
- Nephrology
- Infectious Diseases
- Microbiology
Background:
- Peritoneal dialysis (PD)-associated peritonitis is a significant complication, commonly caused by bacteria.
- Coagulase-negative Staphylococcus is the most frequent pathogen, but rare organisms can also cause PD peritonitis.
Purpose of the Study:
- To report a rare case of PD-associated peritonitis caused by Tsukamurella conjunctivitidis.
- To emphasize the diagnostic challenges and the utility of 16S rRNA gene sequencing in identifying rare pathogens.
Main Methods:
- Case report of a 62-year-old male patient undergoing PD with symptoms of peritonitis.
- Diagnosis confirmed by clinical presentation, peritoneal fluid analysis (elevated WBC, gram-positive rods), and bacterial culture.
- Identification of the causative agent using 16S rRNA gene sequencing.
Main Results:
- The patient presented with fever and abdominal pain, diagnosed with PD-associated peritonitis.
- Tsukamurella conjunctivitidis was identified as the causative agent, presenting as yellow-grayish, dry, membrane-like colonies.
- Peritonitis was refractory to antibiotics, necessitating PD catheter removal and switch to hemodialysis.
Conclusions:
- Tsukamurella conjunctivitidis is a rare cause of PD-associated peritonitis that requires consideration in challenging diagnostic cases.
- 16S rRNA gene sequencing is a valuable tool for accurate identification of this rare pathogen.
- Further studies are needed to understand the characteristics and optimal management of T. conjunctivitidis infections in PD patients.
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