Extended Quality (eQual): Radial threshold clustering based on n-ary similarity.
Lexin Chen1,2, Micah Smith3, Daniel R Roe4
1Department of Chemistry, University of Florida, Gainesville, Florida 32611, USA.
Biorxiv : the Preprint Server for Biology
|December 16, 2024
Summary
Extended Quality Clustering improves upon Radial Threshold Clustering by enhancing speed and ensuring consistent results. This new algorithm offers efficient, order-invariant frame clustering with more compact and distinct clusters.
Area of Science:
- Computer Science
- Data Science
- Machine Learning
Background:
- Radial Threshold Clustering (RTC) is a partitioning algorithm grouping similar frames based on seed similarity.
- Existing RTC algorithm exhibits quadratic time complexity (O(n^2)), limiting efficiency with large datasets.
- RTC results are sensitive to input frame order, leading to inconsistent clustering outcomes.
Purpose of the Study:
- To enhance the Radial Threshold Clustering (RTC) algorithm into an improved version named Extended Quality Clustering (EQC).
- To address the scalability and order-dependency issues inherent in the original RTC algorithm.
- To develop a more efficient and robust clustering method for frame analysis.
Main Methods:
- Implemented k-means++ for accelerated seed selection, optimizing the initial seeding process.
- Introduced extended similarity indices to resolve cluster ties, prioritizing densest and most compact clusters.
- Modified the core clustering logic to achieve linear time complexity (O(n)).
Main Results:
- The Extended Quality Clustering (EQC) algorithm achieves linear time complexity, significantly improving efficiency.
- EQC demonstrates order-invariance, producing consistent clustering results regardless of input frame sequence.
- The enhanced algorithm generates more compact and well-separated clusters compared to the original RTC.
Conclusions:
- Extended Quality Clustering (EQC) effectively overcomes the scalability and order-dependency limitations of Radial Threshold Clustering (RTC).
- The novel approach ensures efficient and reliable frame clustering, suitable for large-scale data.
- EQC provides a more robust and accurate clustering solution with improved cluster quality.
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