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A Combined 3D Tissue Engineered In Vitro/In Silico Lung Tumor Model for Predicting Drug Effectiveness in Specific Mutational Backgrounds
Published on: April 6, 2016
Identification of STAT3 phosphorylation inhibitors using generative deep learning, virtual screening, molecular
Weiji Cai1,2, Beier Jiang3, Yichen Yin1,2
1School of Basic Medical Sciences, Ningxia Medical University, 1160 Shengli Road, Yinchuan, 750004, Ningxia, China.
Abstract:
The development of phosphorylation-suppressing inhibitors targeting Signal Transducer and Activator of Transcription 3 (STAT3) represents a promising therapeutic strategy for non-small cell lung cancer (NSCLC). In this study, a generative model was developed using transfer learning and virtual screening, leveraging a comprehensive dataset of STAT3 inhibitors to explore the chemical space for novel candidates. This approach yielded a chemically diverse library of compounds, which were prioritized through molecular docking and molecular dynamics (MD) simulations. Among the identified candidates, the HG110 molecule demonstrated potent suppression of STAT3 phosphorylation at Tyr705 and inhibited its nuclear translocation in IL6-stimulated H441 cells. Rigorous MD simulations further confirmed the stability and interaction profiles of top candidates within the STAT3 binding site. Notably, HG106 and HG110 exhibited superior binding affinities and stable conformations, with favorable interactions involving key residues in the STAT3 binding pocket, outperforming known inhibitors. These findings underscore the potential of generative deep learning to expedite the discovery of selective STAT3 inhibitors, providing a compelling pathway for advancing NSCLC therapies.
Insights
This study developed a generative model to discover novel Signal Transducer and Activator of Transcription 3 (STAT3) inhibitors for non-small cell lung cancer (NSCLC). The novel HG110 molecule effectively suppressed STAT3 phosphorylation and nuclear translocation, showing therapeutic potential.
Area of Science:
- Oncology
- Pharmacology
- Computational Chemistry
Background:
- Signal Transducer and Activator of Transcription 3 (STAT3) is a key target for non-small cell lung cancer (NSCLC) therapy.
- Developing effective STAT3 phosphorylation inhibitors is crucial for advancing NSCLC treatment strategies.
Purpose of the Study:
- To discover novel, potent STAT3 inhibitors for NSCLC using a generative deep learning model.
- To identify and validate lead compounds with strong binding affinities and therapeutic potential.
Main Methods:
- Utilized transfer learning and virtual screening to build a generative model for STAT3 inhibitors.
- Employed molecular docking and molecular dynamics (MD) simulations for compound prioritization and validation.
- Assessed STAT3 phosphorylation suppression and nuclear translocation inhibition in cellular models.
Main Results:
- Generated a diverse library of potential STAT3 inhibitors, identifying HG110 as a potent candidate.
- HG110 demonstrated significant suppression of STAT3 phosphorylation at Tyr705 and inhibited nuclear translocation.
- MD simulations confirmed stable binding conformations and favorable interactions for HG106 and HG110, outperforming existing inhibitors.
Conclusions:
- Generative deep learning accelerates the discovery of selective STAT3 inhibitors.
- The identified compounds, particularly HG110, offer a promising therapeutic avenue for NSCLC treatment.
- This approach provides a robust platform for developing targeted cancer therapies.
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