Heterophilous distribution propagation for Graph Neural Networks
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Updated: Jun 4, 2025

Neural Activity Propagation in an Unfolded Hippocampal Preparation with a Penetrating Micro-electrode Array
Published on: March 27, 2015
Zhuonan Zheng1, Sheng Zhou2, Hongjia Xu1
1College of Computer Science, Zhejiang University, Hangzhou, 310027, China; Zhejiang Key Laboratory of Accessible Perception and Intelligent Systems, Zhejiang University, Hangzhou, 310027, China.
Abstract:
Graph Neural Networks (GNNs) have achieved remarkable success in various graph mining tasks by aggregating information from neighborhoods for representation learning. The success relies on the homophily assumption that nearby nodes exhibit similar behaviors, while it may be violated in many real-world graphs. Recently, heterophilous graph neural networks (HeterGNNs) have attracted increasing attention by modifying the neural message passing schema for heterophilous neighborhoods. However, they suffer from insufficient neighborhood partition and heterophily modeling, both of which are critical but challenging to break through. To tackle these challenges, in this paper, we propose heterophilous distribution propagation (HDP) for graph neural networks. Instead of aggregating information from all neighborhoods, HDP adaptively separates the neighbors into homophilous and heterophilous parts based on the pseudo assignments during training. The heterophilous neighborhood distribution is learned with orthogonality-oriented constraint via a trusted prototype contrastive learning paradigm. Both the homophilous and heterophilous patterns are propagated with a novel semantic-aware message-passing mechanism. We conduct extensive experiments on 9 benchmark datasets with different levels of homophily. Experimental results show that our method outperforms representative baselines on heterophilous datasets.
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