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Active learning of molecular data for task-specific objectives.
Kunal Ghosh1,2, Milica Todorović3, Aki Vehtari2
1Department of Applied Physics, Aalto University, P.O. Box 11000, FI-00076 Aalto, Finland.
The Journal of Chemical Physics
|January 2, 2025
Summary
Active learning (AL) offers data efficiency but its computational savings vary. For targeted molecular searches, AL achieved up to 64% data savings, outperforming random sampling.
Area of Science:
- Computational Chemistry
- Machine Learning
- Data Science
Background:
- Active learning (AL) is a promising machine learning approach for data efficiency.
- Its practical utility and potential for computational savings are application-dependent.
- Understanding when AL yields benefits is crucial for practitioners.
Purpose of the Study:
- To systematically assess active learning performance across diverse molecular datasets and scientific tasks.
- To identify factors influencing AL's effectiveness and computational savings.
- To provide guidance on optimal AL strategies for molecular data analysis.
Main Methods:
- Implemented active learning using Gaussian processes (GP) with a many-body tensor molecular representation.
- Evaluated AL on tasks of dataset compilation and targeted molecular searches.
- Tested various acquisition strategies, batch sizes, and GP noise settings.
Main Results:
- AL performance varied by task; it excelled in targeted molecular searches, yielding up to 64% data savings.
- For dataset compilation, AL performance was sensitive to GP noise settings and acquisition strategies.
- Optimal AL performance for targeted searches occurred when target molecules had minimal overlap with the overall dataset distribution.
Conclusions:
- Active learning's effectiveness is task-specific, particularly influenced by target and dataset distributions.
- AL offers significant computational savings for targeted molecular searches.
- Careful selection of AL strategies and understanding data distribution are key to maximizing benefits.
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