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Updated: Jun 4, 2025

In Silico Identification and Characterization of circRNAs During Host-Pathogen Interactions
Published on: October 21, 2022
Long non-coding RNA C1RL-AS1 aggravates influenza A virus pneumonia through miR-16-5p/LAMP3
Xingjuan Liao1, Qin Liang1, Chao Xu1
1Department of Pediatrics, Taihe Hospital, Affiliated Hospital of Hubei University of Medicine, No.32, Renmin South Road, Shiyan, 442000, China.
Insights
C1RL-AS1 is elevated in children with influenza A virus (IAV) pneumonia and may serve as a diagnostic marker. It impacts viral replication and cell survival by regulating miR-16-5p and LAMP3.
Area of Science:
- Molecular Biology
- Virology
- Genetics
Background:
- Influenza A virus (IAV) poses significant public health risks.
- Understanding the molecular mechanisms of IAV pneumonia is crucial for developing effective diagnostics and treatments.
Purpose of the Study:
- To investigate the role of C1RL-AS1 in influenza A virus (IAV) pneumonia.
- To explore C1RL-AS1 as a potential diagnostic biomarker for IAV pneumonia in children.
Main Methods:
- RT-qPCR was used to measure C1RL-AS1 expression in pediatric patients and A549 cells.
- Receiver Operating Characteristic (ROC) analysis was performed on C1RL-AS1 expression data.
- C1RL-AS1 knockdown experiments were conducted in A549 cells to assess its functional role.
- Bioinformatic tools were employed to predict and validate downstream miRNAs and their target genes.
Main Results:
- C1RL-AS1 expression was significantly upregulated in children with IAV pneumonia and in IAV-infected A549 cells.
- C1RL-AS1 expression levels effectively differentiated IAV pneumonia patients from healthy controls.
- Knockdown of C1RL-AS1 reduced viral nucleoprotein (NP) production, enhanced cell survival, and inhibited apoptosis.
- C1RL-AS1 was found to sponge miR-16-5p, and miR-16-5p targeted LAMP3, a gene associated with pneumonia.
Conclusions:
- C1RL-AS1 is a potential diagnostic biomarker for pediatric IAV pneumonia.
- C1RL-AS1 plays a role in IAV pneumonia pathogenesis by modulating the miR-16-5p/LAMP3 axis.
- Targeting the C1RL-AS1/miR-16-5p/LAMP3 pathway may offer therapeutic strategies against IAV infection.
Abstract:
Influenza A viruses continue to pose a serious threat to public health and economic stability. To investigate the role of C1RL-AS1 in influenza A virus (IAV) pneumonia. Using RT-qPCR analysis, we determined C1RL-AS1 expression levels in children with IAV-infected pneumonia and A549 cells. C1RL-AS1 expression levels in children were subjected to ROC analysis. C1RL-AS1 was knocked down to investigate its role in IAV-infected A549 cells, including effects on viral nucleoprotein (NP) production, cell survival, and apoptosis. Downstream miRNAs of C1RL-AS1 were predicted and validated. MiR-16-5p target genes were predicted and validated. C1RL-AS1 was up-regulated in IAV-infected children and A549 cells. C1RL-AS1 expression levels distinguished children with IAV pneumonia from healthy children. Knockdown of C1RL-AS1 attenuated viral NP production, promoted A549 cell survival, and inhibited apoptosis. MiR-16-5p was a downstream C1RL-AS1 miRNA. miR-16-5p counteracted the anti-IAV infection effect brought about by C1RL-AS1 knockdown. LAMP3 was a miR-16-5p target gene associated with pneumonia. LAMP3 restored the cellular effects brought about by C1RL-AS1/miR-16-5p co-knockdown. C1RL-AS1 is a possible diagnostic factor for IAV pneumonia in children. C1RL-AS1 may participate in IAV pneumonia by sponging miR-16-5p and then moderating LAMP3.
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