Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Molecular Models02:00

Molecular Models

37.8K
Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
37.8K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

The genetic control of growth rate: a systems biology study in yeast.

BMC systems biology·2012
Same author

Presence of somatic mutations in most early-stage pancreatic intraepithelial neoplasia.

Gastroenterology·2012
Same author

Terpenoids from root bark of Celastrus orbiculatus.

Phytochemistry·2011
Same author

Zero-order noise suppression with various space-shifting manipulations of reconstructed images in digital holography.

Applied optics·2011
Same author

Design, synthesis and insecticidal activities of novel pyrazole amides containing hydrazone substructures.

Pest management science·2011
Same author

Imbricate scales as a design construct for microsystem technologies.

Small (Weinheim an der Bergstrasse, Germany)·2011

Related Experiment Video

Updated: Jun 4, 2025

Obtaining 3D Chemical Maps by Energy Filtered Transmission Electron Microscopy Tomography
08:15

Obtaining 3D Chemical Maps by Energy Filtered Transmission Electron Microscopy Tomography

Published on: June 9, 2018

6.4K

D3-ImgNet: A Framework for Molecular Properties Prediction Based on Data-Driven Electron Density Images.

Junfeng Zhao1,2, Lixin Tang1, Jiyin Liu3

  • 1National Frontiers Science Center for Industrial Intelligence and Systems Optimization, Northeastern University, Shenyang 110819, China.

The Journal of Physical Chemistry. A
|January 3, 2025
PubMed
Summary

We developed D3-ImgNet, a deep learning framework using electron density images to predict molecular properties. This AI approach integrates physics, achieving high accuracy for atomization energies, dipole moments, and chemical reaction paths.

More Related Videos

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
09:51

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

Published on: July 16, 2017

15.4K
Author Spotlight: Exploring Cellular Processes by Modeling Ligands in Cryo-EM Maps
09:30

Author Spotlight: Exploring Cellular Processes by Modeling Ligands in Cryo-EM Maps

Published on: July 19, 2024

1.2K

Related Experiment Videos

Last Updated: Jun 4, 2025

Obtaining 3D Chemical Maps by Energy Filtered Transmission Electron Microscopy Tomography
08:15

Obtaining 3D Chemical Maps by Energy Filtered Transmission Electron Microscopy Tomography

Published on: June 9, 2018

6.4K
Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
09:51

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

Published on: July 16, 2017

15.4K
Author Spotlight: Exploring Cellular Processes by Modeling Ligands in Cryo-EM Maps
09:30

Author Spotlight: Exploring Cellular Processes by Modeling Ligands in Cryo-EM Maps

Published on: July 19, 2024

1.2K

Area of Science:

  • Quantum Chemistry
  • Materials Science
  • Artificial Intelligence

Background:

  • Machine learning is increasingly used for predicting molecular properties.
  • Existing models often lack integration with physical mechanisms.

Purpose of the Study:

  • Propose D3-ImgNet, a novel deep learning framework for molecular property prediction.
  • Integrate data-driven electron density images with physical principles.

Main Methods:

  • Developed D3-ImgNet framework combining group theory, DFT mechanisms, deep learning, and multiobjective optimization.
  • Utilized QM9 and QM9X datasets for property prediction (atomization energies, dipole moments, forces).
  • Applied framework to SN2 reaction dataset for minimum energy path prediction.

Main Results:

  • Achieved high accuracy in predicting molecular atomization energies using the QM9 dataset.
  • Demonstrated satisfactory predictive capabilities for dipole moments and forces on the QM9X dataset.
  • Successfully predicted minimum energy paths for SN2 reactions, showing framework adaptability.

Conclusions:

  • D3-ImgNet framework effectively predicts molecular properties and reaction pathways.
  • Visualizations confirm accurate replication of electron density transfer.
  • The framework shows potential for accelerating materials discovery and high-throughput screening.