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Synteny and Evolution02:31

Synteny and Evolution

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John H. Renwick first coined the term “synteny” in 1971, which refers to the genes present on the same chromosomes, even if they are not genetically linked. The species with common ancestry tend to show conserved syntenic regions. Therefore, the concept of synteny is nowadays used to describe the evolutionary relationship between species.
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The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was  generated by gene duplication and divergence, indicating its critical role in evolution.
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The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes. 
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In addition to multiple alleles at the same locus influencing traits, numerous genes or alleles at different locations may interact and influence phenotypes in a phenomenon called epistasis. For example, rabbit fur can be black or brown depending on whether the animal is homozygous dominant or heterozygous at a TYRP1 locus. However, if the rabbit is also homozygous recessive at a locus on the tyrosinase gene (TYR), it will have an unshaded coat that appears white, regardless of its TYRP1...
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Phylogeny is concerned with the evolutionary diversification of organisms or groups of organisms. A group of organisms with a name is called a taxon (singular). Taxa (plural) can span different levels of the evolutionary hierarchy. For instance, the group containing all birds is a taxon (comprising the class Aves), and the group of all species of daisies (the genus Bellis) is a taxon. Phylogenies can likewise include just one genus (i.e., depict species relationships) or span an entire kingdom.
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Functional differences between rodent and human PD-1 linked to evolutionary divergence.

Takeya Masubuchi1, Lin Chen2, Nimi Marcel3

  • 1Department of Cell and Developmental Biology, School of Biological Sciences, University of California San Diego, La Jolla, CA 92093, USA.

Science Immunology
|January 3, 2025
PubMed
Summary
This summary is machine-generated.

Human programmed cell death protein 1 (PD-1) is more potent than mouse PD-1 due to stronger ligand binding and phosphatase recruitment. This highlights species-specific differences in PD-1 function and anti-PD-1 therapy response.

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Area of Science:

  • Immunology
  • Molecular Biology
  • Evolutionary Biology

Background:

  • Understanding programmed cell death protein 1 (PD-1) inhibition is crucial for cancer immunotherapy.
  • Existing knowledge primarily relies on mouse models, despite significant amino acid divergence between human and mouse PD-1 (59.6% identity).

Purpose of the Study:

  • To investigate the functional differences between human and mouse PD-1.
  • To elucidate the molecular mechanisms underlying these species-specific variations.
  • To assess the impact of human PD-1 function in a preclinical cancer model.

Main Methods:

  • Comparative analysis of human and mouse PD-1 interactions with PD-L1 and PD-L2.
  • Assessment of Shp2 phosphatase recruitment to PD-1.
  • Functional evaluation of humanized PD-1 in a mouse melanoma model with adoptively transferred T cells.
  • Identification and evolutionary analysis of conserved PD-1 motifs.

Main Results:

  • Human PD-1 exhibits stronger inhibitory function compared to mouse PD-1.
  • Human PD-1 demonstrates enhanced binding to PD-L1/PD-L2 and more efficient Shp2 recruitment.
  • Humanization of the PD-1 intracellular domain in mice impaired CD8+ T cell antitumor activity and amplified anti-PD-1 responses.
  • A conserved motif, absent in rodents, was identified as critical for differential Shp2 recruitment, suggesting rodent-specific functional attenuation of PD-1.

Conclusions:

  • Significant species-specific differences exist in PD-1 pathway function between humans and rodents.
  • These differences impact the efficacy of anti-PD-1 therapies and the translatability of mouse models.
  • The findings have critical implications for the evolution of immune checkpoints and the development of more effective immunotherapies.