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Updated: Jun 3, 2025

Free Radicals in Chemical Biology: from Chemical Behavior to Biomarker Development
Published on: April 15, 2013
Interpretable Machine Learning Models Delivering a New Perspective for the Reaction Mechanism between Organic
Yiqiu Wu1,2, Zhixiang Wang1,2, Guangfei Yu3
1Chemistry & Chemical Engineering Data Center, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China.
Abstract:
Machine learning (ML) is expected to bring new insights into the impact of organic structures on the reaction mechanisms in reactive oxygen species oxidation. However, understanding the underlying chemical mechanisms still faces challenges due to the limited interpretability of the ML models. In this study, interpretable ML models were established to predict the second-order rate constants between hydroxyl radicals (•OH) and organics (k•OH). It was found that the energy of the highest occupied molecular orbital (EHOMO), the number of aromatic rings (NAR), and the number of carbon atoms of organics (NC) have important impacts on k•OH. The positive correlation between k•OH and EHOMO can be explained by the regularity of electrophilic reaction, while the relationship between k•OH and NAR and NC seems to be related with reactive sites. Furthermore, a rapid judgment method for reaction mechanism was developed based on an unsupervised learning approach which automatically divided organics into three clusters. Additionally, this methodology was applied to the reaction between organics and sulfate radicals. This study offers a rational model for predicting reaction mechanisms and provides more insights into the impact of organic structures on the reaction mechanism from the perspective of big data.
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