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Updated: Jun 3, 2025

Quadruple-Checkerboard: A Modification of the Three-Dimensional Checkerboard for Studying Drug Combinations
Published on: July 24, 2021
Antibiotic candidates for Gram-positive bacterial infections induce multidrug resistance
Ana Martins1,2, Fanni Judák1,3, Zoltán Farkas1
1Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Centre Szeged, Szeged HU-6726, Hungary.
Abstract:
Several antibiotic candidates are in development against Gram-positive bacterial pathogens, but their long-term utility is unclear. To investigate this issue, we studied the laboratory evolution of resistance to antibiotics that have not yet reached the market. We found that, with the exception of compound SCH79797, antibiotic resistance generally readily evolves in Staphylococcus aureus. Cross-resistance was detected between such candidates and antibiotics currently in clinical use, including vancomycin, daptomycin, and the promising antibiotic candidate teixobactin. These patterns were driven by overlapping molecular mechanisms through mutations in regulatory systems. In particular, teixobactin-resistant bacteria displayed clinically relevant multidrug resistance and retained their virulence in an invertebrate infection model, raising concerns. More generally, we demonstrate that putative resistance mutations against candidate antibiotics are already present in natural bacterial populations. Therefore, antibiotic resistance in nature may evolve readily from the selection of preexisting genetic variants. Our work highlights the importance of predicting future evolution of resistance to antibiotic candidates at an early stage of drug development.
Insights
Antibiotic resistance readily evolves in Staphylococcus aureus against new drug candidates. Pre-existing genetic variants in bacteria may accelerate resistance, impacting future antibiotic development and clinical use.
Area of Science:
- Microbiology
- Molecular Biology
- Drug Discovery
Background:
- New antibiotic candidates are crucial for combating Gram-positive bacterial infections.
- The long-term effectiveness of novel antibiotics is often uncertain due to potential resistance development.
Purpose of the Study:
- To investigate the laboratory evolution of antibiotic resistance in Staphylococcus aureus against preclinical antibiotic candidates.
- To assess cross-resistance patterns between novel candidates and existing antibiotics.
- To understand the molecular mechanisms driving resistance evolution.
Main Methods:
- Laboratory evolution experiments were conducted using Staphylococcus aureus and various antibiotic candidates.
- Cross-resistance was tested against established antibiotics like vancomycin and daptomycin.
- Molecular mechanisms were analyzed through mutation identification in regulatory systems.
- Virulence of resistant strains was evaluated using an invertebrate infection model.
Main Results:
- Antibiotic resistance evolved readily in Staphylococcus aureus for most candidates, except SCH79797.
- Significant cross-resistance was observed between candidates and current clinical antibiotics, including vancomycin, daptomycin, and teixobactin.
- Mutations in regulatory systems were identified as a key driver of resistance and cross-resistance.
- Teixobactin-resistant strains exhibited multidrug resistance and maintained virulence.
- Putative resistance mutations were found to be present in natural bacterial populations.
Conclusions:
- Antibiotic resistance can readily emerge and spread through selection of pre-existing genetic variants.
- Cross-resistance poses a significant threat to the clinical utility of both new and existing antibiotics.
- Early prediction of resistance evolution is critical for successful antibiotic development.
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