Related Experiment Video
Updated: Jun 3, 2025

Controlling Flow Speeds of Microtubule-Based 3D Active Fluids Using Temperature
Published on: November 26, 2019
Thermostat-induced artificial lane formation in non-equilibrium molecular dynamics
Biao Lan1,2, Yanting Wang1,2,3
1CAS Key Laboratory of Theoretical Physics, Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing 100190, China.
Abstract:
While most thermostats in molecular dynamics are designed for equilibrium systems, their extension to non-equilibrium simulations has little theoretical justification. In the literature, an artifact referred to as "lane formation" was discovered; however, its cause remained unclear and was simply attributed to a constraint on velocity fluctuations or non-ergodicity in thermostats. In addition, global deterministic thermostatted dynamics was found to exhibit unceasing phase-space compression in steady states, incompatible with their expected stationary distributions and Gibbs entropy, which was mistakenly perceived as inescapable. In this work, we pinpoint that the dynamical cause of artificial lane formation is a stable fixed point in the momentum space induced by improper velocity rescaling, which produces effective repulsion between different species in a color flow, drains transverse kinetic energy and generates the unceasing compression. This artifact is deeply rooted in global deterministic thermostats, such as the Nosé-Hoover dynamics and configurational thermostat. With proper rescaling, the Langevin thermostat completely eliminates artificial lane formation and exemplifies how incompressible phase space and stationary distributions can be retained for non-equilibrium steady states.
More Related Videos
05:00Author Spotlight: Streamlining Visual Dynamics to Simplify Molecular Dynamics Simulations Using Gromacs
Published on: August 9, 2024
09:17Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
Published on: March 1, 2022
Related Concept Videos
Atomic Nuclei: Nuclear Relaxation Processes
Thermal Sigmatropic Reactions: Overview
Sigmatropic shifts are classified based on an order term [i, j ], where i and j indicate the number of atoms across which each end of the σ bond migrates. Below are examples of a [3,3] sigmatropic shift in...
Atomic Nuclei: Types of Nuclear Relaxation
In spin–lattice or longitudinal relaxation, the excited spins exchange energy with the surrounding lattice as they return to the lower energy level. Among several mechanisms that contribute to spin–lattice relaxation, magnetic dipolar interactions are significant. Here, the excited nucleus transfers...