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Published on: January 8, 2020
Machine learning in public health informatics: Evidence that complex sampling structures may not be needed for
Zhengye Si1, Jinpu Li1, Emily Leary1
1Department of Orthopaedic Surgery, Thompson Laboratory for Regenerative Orthopaedics, School of Medicine, University of Missouri, 1100 Virginia Avenue, Columbia , MO 65211, USA.
Machine learning models show similar predictive ability to traditional methods for osteoarthritis prediction using US National Health and Nutrition Examination Survey data without sampling weights.
Area of Science:
- Health Informatics
- Biostatistics
- Machine Learning
Background:
- National health surveys often have imbalanced outcome data, posing challenges for predictive modeling.
- Traditional statistical models may not optimally handle complex survey designs and imbalanced data.
- Machine learning offers alternative approaches for analyzing large-scale health survey data.
Purpose of the Study:
- To assess the predictive performance of machine learning models for imbalanced outcomes in national health surveys.
- To compare machine learning models against traditional logistic regression incorporating complex sampling designs.
- To evaluate models without the use of survey sampling weights.
Main Methods:
- Utilized US National Health and Nutrition Examination Survey (USNHANES) data.
- Compared support vector machine, random forest, LASSO regression, and deep neural networks.
- Employed oversampling, undersampling, and combined resampling techniques for class imbalance.
- Benchmarked against logistic regression with complex sampling design integration.
Main Results:
- Machine learning models demonstrated comparable balanced accuracy (0.72-0.76) to traditional methods.
- Support vector machine and neural networks excelled in sensitivity (0.79-0.83).
- Random forest achieved the highest specificity (0.86-0.96).
- Area Under the Curve (PR-AUC) and Brier scores indicated varying model performance.
Conclusions:
- Machine learning models offer similar predictive power to established methods for osteoarthritis prediction using USNHANES data.
- The evaluated machine learning models can effectively predict imbalanced outcomes without sampling weights.
- These findings support the use of machine learning in analyzing complex national health survey data.
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