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Updated: Jun 2, 2025

Transcriptome Analysis of Single Cells
Published on: April 25, 2011
Single-nucleus transcriptomics reveals time-dependent and cell-type-specific effects of psilocybin on gene expression
Clara Liao1,2, Ethan O'Farrell3,4, Yaman Qalieh3,4
1Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA.
Psilocybin and ketamine alter gene expression in mouse brains, affecting neural circuits and behavior. These psychedelic-induced transcriptional changes are cell-type specific and time-dependent, potentially explaining long-term therapeutic effects.
Area of Science:
- Neuroscience
- Genomics
- Pharmacology
Background:
- Classic psychedelics, like psilocybin, show therapeutic potential for mental illnesses.
- Psilocybin administration induces lasting neural and behavioral changes, suggesting transcriptional alterations.
- Understanding the molecular mechanisms of psychedelics is crucial for therapeutic development.
Purpose of the Study:
- To investigate the time-dependent and cell-type specific gene expression changes induced by psilocybin in the mouse brain.
- To compare the transcriptional effects of psilocybin with ketamine.
Main Methods:
- Single-nucleus RNA sequencing was performed on the dorsal medial frontal cortex of mice.
- Samples were collected at various time points (1-72 hours) after psilocybin or ketamine administration.
- Differential gene expression analysis was conducted across different cell types.
Main Results:
- Psilocybin altered gene expression in excitatory neurons (synaptic plasticity) and GABAergic neurons (mitochondrial function).
- Transcriptional responses to psilocybin were time-dependent, with early (1-2 hours) and late (72 hours) phases.
- Ketamine induced transcriptional changes highly correlated with those of psilocybin.
Conclusions:
- Psilocybin induces distinct, time-dependent, and cell-type specific gene expression changes in the medial frontal cortex.
- These molecular alterations may underlie the long-term effects of psilocybin on neural circuits and behavior.
- The shared transcriptional pathways between psilocybin and ketamine suggest common mechanisms of action.
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