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Establishing a Competing Risk Regression Nomogram Model for Survival Data
Published on: October 23, 2020
Development and assessment of a mortality risk prediction nomogram model for pneumocystis disease in ICU within 28
Yiru Weng1, Tingting Zhou1, Honghua Ye2
1The Affiliated Lihuili Hospital of Ningbo University, Ningbo, 315040, Zhejiang, People's Republic of China.
Abstract:
To develop and assess a nomogram predictive model for evaluating the 28-day mortality risk in patients diagnosed with Pneumocystis who have been admitted to the intensive care unit (ICU). From 2008 to 2022, clinical data on patients with Pneumocystis were collected using the American Critical Care Medical Information Database IV (MIMIC-IV). Initially, 63 significant predictive indicators were included, with ICU admission as the time node and all-cause mortality within 28 days as the outcome. Using complete data modeling, the variable selection approach combines two methods: Lasso regression (glmnet package) and collinearity screening (car package). Use the bootstrap method 1000 times for internal validation. Calculate the AUC, mean sensitivity, and specificity of 1000 resamplings, as well as the 95% confidence interval, and then plot the ROC, calibration, and DCA curves. The patients were split into two groups based on their 28-day survival status: 83 cases (67.48%) in the survival group and 40 instances (32.52%) in the death group. Five variables-the history of malignant tumors, Lods scores, Oasis scores, and complications of shock and severe renal injury-were eventually included in the entire sample after screening. According to Receiver Operating Characteristic (ROC) analysis, the model's sensitivity was 0.600 (95% CI 0.448-0.752), specificity was 0.904 (95% CI 0.840-0.967), and AUC was 0.814 (95% CI 0.732-0.897). The DCA curve indicates that the model application has high accuracy, which leads to a net benefit for population prediction, and the model calibration curve demonstrates good calibration accuracy. The bootstrap model's 1000 internal validation results demonstrate that the model's calibration performance is good and that its accuracy is highest when the probability of patient outcome events falls between 35 and 60%, which yields the highest net benefit for population prediction. This study developed a nomogram utilizing MIMIC-IV clinical big data to predict the 28-day mortality risk in patients with Pneumocystis disease. Incorporating five critical factors, the nomogram offers a user-friendly, visual method for calculating personalized risk scores based on patient-specific information, including medical history, laboratory results, and clinical scores. Demonstrating robust discrimination and calibration, this tool provides clinicians with a valuable resource for assessing prognosis and making evidence-based treatment decisions.
Insights
This study developed a nomogram to predict 28-day mortality risk in intensive care unit (ICU) patients with Pneumocystis pneumonia. The model identifies key risk factors, offering a visual tool for personalized prognosis assessment.
Area of Science:
- Critical Care Medicine
- Medical Informatics
- Epidemiology
Background:
- Pneumocystis pneumonia (PCP) is a significant cause of mortality in intensive care unit (ICU) patients.
- Accurate prediction of mortality risk is crucial for timely intervention and resource allocation.
Purpose of the Study:
- To develop and validate a nomogram predictive model for 28-day mortality in ICU patients with PCP.
- Identify key clinical indicators associated with 28-day mortality in this patient cohort.
Main Methods:
- Utilized the MIMIC-IV database (2008-2022) for retrospective data collection.
- Employed Lasso regression and collinearity screening for variable selection from 63 initial indicators.
- Validated the model using 1000 bootstrap resamplings, calculating AUC, sensitivity, specificity, and plotting ROC, calibration, and decision curve analysis (DCA) curves.
Main Results:
- The final model included five variables: history of malignant tumors, Lods score, Oasis score, shock, and severe renal injury.
- The nomogram demonstrated good predictive performance with an AUC of 0.814 (95% CI 0.732-0.897).
- The model showed good calibration accuracy and provided the highest net benefit for population prediction between 35-60% probability.
Conclusions:
- A user-friendly nomogram was developed to predict 28-day mortality risk in ICU patients with PCP.
- The nomogram integrates critical factors for personalized risk assessment, aiding clinical decision-making.
- This validated tool supports evidence-based prognosis evaluation and treatment strategies for PCP patients.
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