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How to Efficiently Annotate Images for Best-Performing Deep Learning-Based Segmentation Models: An Empirical Study
Yixin Zhang1, Shen Zhao2, Hanxue Gu2
1Department of Electrical and Computer Engineering, Duke University, Durham, NC, USA. yixin.zhang7@duke.edu.
Journal of Imaging Informatics in Medicine
|January 22, 2025
Summary
Precise pixel-level annotations for training deep neural networks (DNNs) are costly. This study shows that using noisy or weak labels for DNN image segmentation offers better cost-effectiveness with comparable performance.
Area of Science:
- Computer Vision
- Machine Learning
- Data Annotation
Background:
- Deep neural networks (DNNs) excel in image segmentation but require extensive pixel-level annotations.
- Dataset preparation for DNNs is labor-intensive and expensive due to the need for precise object outlines.
- Alternative annotation strategies like weak labels (bounding boxes, scribbles) or noisy labels can reduce costs.
Purpose of the Study:
- To evaluate the cost-effectiveness of various annotation strategies for DNN-based image segmentation.
- To determine if less precise annotations can achieve comparable performance to pixel-level annotations within budget constraints.
- To guide researchers in optimizing annotation budgets for efficient model training.
Main Methods:
- Conducted a cost-effectiveness evaluation of six annotation strategy variants.
- Tested strategies across four diverse datasets.
- Compared performance and cost-efficiency of precise, noisy, and weak annotations.
Main Results:
- The common practice of precise pixel-level annotation is often not the most cost-effective approach.
- Noisy and weak annotations demonstrated usage cases yielding performance similar to perfectly annotated data.
- These alternative methods offered significantly improved cost-effectiveness.
Conclusions:
- Researchers can achieve high-performance DNN image segmentation with significantly reduced annotation costs.
- Utilizing noisy or weak labels is a viable and efficient alternative to precise annotations, especially under budget limitations.
- Findings encourage more efficient use of annotation resources in machine learning research.

