Related Experiment Video
Updated: May 31, 2025

09:32
Deciphering High-Resolution 3D Chromatin Organization via Capture Hi-C
Published on: October 14, 2022
3.3K
High-resolution analysis of human centromeric chromatin.
Daniël P Melters1, Minh Bui2, Tatini Rakshit2,3
1National Cancer Institute, Center for Cancer Research, Laboratory of Receptor Biology and Gene Expression, Bethesda, MD, USA daniel.melters@nih.gov.
Life Science Alliance
|January 23, 2025
Summary
The CENP-C complex shapes centromeric chromatin structure, influencing centromere homeostasis and accessibility for transcription. This study reveals CENP-C
Area of Science:
- Cell Biology
- Epigenetics
- Chromatin Biology
Background:
- Centromeres are essential chromosomal regions for accurate cell division.
- The centromere-specific histone H3 variant CENP-A (also known as CENH3) marks centromeres.
- The constitutive centromere-associated network interacts with CENP-A chromatin throughout the cell cycle, but its structural impact is unclear.
Purpose of the Study:
- To investigate how the CENP-C complex modifies CENP-A nucleosome conformations in vivo.
- To elucidate the role of CENP-C in regulating centromeric chromatin structure and homeostasis.
Main Methods:
- Purification of endogenous centromeric chromatin associated with the CENP-C complex across the cell cycle.
- Single-molecule imaging and biochemical assays (MNase digestion).
- Analysis of CENP-A nucleosomal configurations and CENP-C complex dimensions.
Main Results:
- CENP-C complex-bound chromatin is resistant to MNase digestion.
- The size of the CENP-C complex increases throughout the cell cycle, peaking in mitosis.
- Two distinct CENP-A nucleosomal configurations were identified, with a taller variant associated with CENP-C.
- CENP-A mutants partially rescued defects caused by CENP-C overexpression.
Conclusions:
- CENP-C is crucial for maintaining centromere homeostasis.
- CENP-C supports a unique higher-order structure of centromeric chromatin.
- CENP-C alters the accessibility of centromeric chromatin to the transcriptional machinery.
Related Concept Videos
Histone Variants at the Centromere
4.3K
Histone variants are the histone proteins with structural and sequence variations. These variants may be regarded as “mutant” forms that replace their canonical histone counterparts in the nucleosomes. Specific post-translational modifications on the histone variants enable further chromatin complexity and regulate tissue-specific gene expression. The most common histone variants are from histone H2A, H2B, and linker histone H1 families. However, several variants of histone H3...
4.3K
Heterochromatin
10.2K
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
10.2K
Chromatin Packaging
15.1K
Each human somatic cell contains 6 billion base-pairs of DNA. Each base-pair is 0.34 nm long, which means that each diploid cell contains a staggering 2 meters of DNA. How is such a long DNA strand packed inside a nucleus measuring only 10 - 20 microns in diameter?
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order...
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order...
15.1K
Chromatin Immunoprecipitation- ChIP
11.0K
Chromatin immunoprecipitation, or ChIP, is an antibody-based technique used to identify sites on DNA that bind to transcription factors of interest or histone proteins. It also helps determine the type of histone modifications such as acetylation, phosphorylation, or methylation.
Types of ChIP
ChIP can be divided into two types - X-ChIP and N-ChIP. X-ChIP involves in vivo cross-linking of histones and regulatory proteins to DNA, fragmenting the DNA by sonication, and isolating the protein-DNA...
Types of ChIP
ChIP can be divided into two types - X-ChIP and N-ChIP. X-ChIP involves in vivo cross-linking of histones and regulatory proteins to DNA, fragmenting the DNA by sonication, and isolating the protein-DNA...
11.0K
Chromosome Structure
22.5K
A functional eukaryotic chromosome must contain three elements: a centromere, telomeres, and numerous origins of replication.
The centromere is a DNA sequence that links sister chromatids. This is also where kinetochores, protein complexes to which spindle microtubules attach, are constructed after the chromosome is replicated. The kinetochores allow the spindle microtubules to move the chromosomes within the cell during cell division.
Telomeres consist of non-coding repetitive nucleotide...
The centromere is a DNA sequence that links sister chromatids. This is also where kinetochores, protein complexes to which spindle microtubules attach, are constructed after the chromosome is replicated. The kinetochores allow the spindle microtubules to move the chromosomes within the cell during cell division.
Telomeres consist of non-coding repetitive nucleotide...
22.5K

