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Seed Protein Content Estimation with Bench-Top Hyperspectral Imaging and Attentive Convolutional Neural Network

Imran Said1, Vasit Sagan1,2,3, Kyle T Peterson4

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|January 25, 2025
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Summary

Hyperspectral imaging and machine learning accurately predict wheat seed protein. Convolutional Neural Networks (CNNs) show promise for automated protein estimation in wheat breeding programs.

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Area of Science:

  • Agricultural Science
  • Spectroscopy
  • Machine Learning

Background:

  • Wheat seed protein concentration is a critical quality trait for global food security and animal feed.
  • Accurate and rapid methods for determining wheat protein content are essential for breeding programs and quality control.
  • Traditional methods for protein analysis are often time-consuming and destructive.

Purpose of the Study:

  • To develop and evaluate robust hyperspectral imaging methods for predicting wheat seed protein concentration.
  • To compare the performance of convolutional neural networks (CNNs) with traditional machine learning models for protein estimation.
  • To assess the utility of CNN classification for categorizing wheat protein levels for breeding applications.

Main Methods:

  • Bench-top hyperspectral imaging in the visible, near-infrared (VNIR), and shortwave infrared (SWIR) regions was employed.
  • Computer-vision-aided image co-registration was used to align VNIR and SWIR spectral data.
  • CNNs with attention mechanisms, Random Forest (RF), and Support Vector Machine (SVM) regression models were utilized for analysis.

Main Results:

  • The CNN with attention mechanisms achieved R² values of 0.70 (ventral) and 0.65 (dorsal) for protein content prediction.
  • The RF model outperformed CNNs for direct protein content prediction, reaching an R² of 0.77.
  • CNN classification effectively distinguished low, medium, and high protein concentrations with an R² of 0.82.

Conclusions:

  • Hyperspectral imaging combined with machine learning offers a powerful, non-destructive approach for wheat protein analysis.
  • CNNs demonstrate significant potential for automating wheat protein estimation, particularly for classification tasks in breeding.
  • These techniques can advance precision breeding, optimize seed sorting, and guide targeted agricultural inputs.