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Exploring Zinc C295 as a Dual HIV-1 Integrase Inhibitor: From Strand Transfer to 3'-Processing Suppression.
Sharif Karim Sayyed1,2, Marzuqa Quraishi1, D S Prabakaran3,4
1Amity Institute of Biotechnology, Amity University Maharashtra, Mumbai 410206, Maharashtra, India.
Pharmaceuticals (Basel, Switzerland)
|January 25, 2025
Summary
Zinc C295 shows dual inhibition of HIV-1 integrase strand transfer and 3'-processing, making it a promising candidate for new antiretroviral therapies (ART) to combat AIDS.
Area of Science:
- Virology
- Medicinal Chemistry
- Drug Discovery
Background:
- The global AIDS pandemic necessitates innovative antiretroviral therapies (ART).
- Zinc C295 was previously identified as a potent inhibitor of HIV-1 integrase strand transfer (ST).
- This study investigates Zinc C295's potential dual-targeting capability against HIV-1 integrase 3 ac-processing (3 acP).
Purpose of the Study:
- To evaluate the dual-targeting potential of Zinc C295 against HIV-1 integrase.
- To determine Zinc C295's inhibitory activity against HIV-1 integrase 3 acP.
- To elucidate the molecular interactions underlying Zinc C295's dual inhibition mechanism.
Main Methods:
- In vitro assays adapted from ST inhibition studies were used to assess 3 acP inhibition.
- Molecular docking and molecular dynamics simulations were employed to analyze interactions with the 3 acP allosteric site.
- Computational analyses provided insights into the dual inhibitory mechanism.
Main Results:
- Zinc C295 exhibited significant inhibition of HIV-1 integrase 3 acP activity (IC50 = 4.709 ± 0.97 µM).
- Computational analyses identified key interactions within the enzyme's allosteric site.
- Evidence for a dual inhibitory mechanism against ST and 3 acP was established.
Conclusions:
- Zinc C295 demonstrates dual inhibition of HIV-1 integrase ST and 3 acP.
- This dual-action profile positions Zinc C295 as a promising candidate for next-generation ART.
- Further clinical studies are warranted to explore its therapeutic potential in managing HIV/AIDS.

