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Updated: Jun 12, 2025

Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
Published on: June 21, 2018
STAT4 gene polymorphism may be associated with microscopic polyangiitis susceptibility in a Chinese Guangxi
Shurong Lu1, Huan Zhong1, Fugang Liu1
1The Second Affiliated Hospital of Guangxi Medical University, Department of Nephrology, Nanning, Guangxi 530021, China.
Background:
Microscopic polyangiitis (MPA) is a severe multisystem autoimmune disease featured by small-vessel vasculitis with few or no immune complex, also has a significant genetic predisposition. Growing evidence has confirmed that STAT4 gene is tightly associated with multiple autoimmune diseases, but its contribution to MPA onset is still elusive.
Objective:
The aim was to investigated the association between STAT4 gene polymorphisms (rs7572482, rs7574865 and rs12991409) and MPA susceptibility in a Guangxi population of China.
Methods:
260 MPA patients and 295 healthy adult volunteers were selected, 1:1 propensity score matching (PSM) was performed to control potential confounding variables, then 199 MPA patients and 199 healthy adult volunteers matched in gender, ethnicity and age were included in this study. High-throughput sequencing and multiplex PCR were applied to detect the target STAT4 SNPs. SHEsis and SNPstats were used to evaluated the allele frequency, genotype frequency, linkage disequilibrium (LD), haplotype, and the association between SNPs and the MPA susceptibility in multiple genetic models. SNP-SNP interactions were explored based on generalized multifactor dimensionality reduction (GMDR) algorithm. Some clinical indicators, such as renal pathology and therapeutic effects, were collected and compared.
Results:
The allele and genotype frequencies of rs7574865 displayed significant diversities between case group and control group (p < 0.05). Strong LD was found between rs7572482 and rs12991409 (D'=0.9). The haplotype GGT was related to a reduced risk of MPA (OR = 0.661, 95 %CI: 0.469-0.931, p = 0.017), and haplotype GTT might perform an increased risk of MPA (OR = 1.922, 95 %CI: 1.225-3.015, p = 0.004). Rs7574865 polymorphism was associated with an increased risk of MPA in codominant model (OR:2.03; p = 0.0093), dominant model (OR: 1.88p = 0.0023), and overdominant model (OR:1.57; p = 0.027). In Han and male subgroups, rs7574865 polymorphism dramatically increased the MPA risk. GMDR suggested that STAT4 rs7574865 and PTPN22 rs3811021 composed the most risk combinations (p = 0.0010). Moreover, renal pathology, Birmingham vasculitis activity score (BVAS), and alanine aminotransferase (ALT) might be linked with STAT4 gene polymorphisms (p < 0.05).
Conclusions:
The genetic polymorphism of STAT4 may be associated with MPA susceptibility and renal pathological classification in Chinese Guangxi population; the T allele of rs7574865 may be an important risk factor for MPA.
Insights
The STAT4 gene rs7574865 polymorphism is linked to an increased risk of microscopic polyangiitis (MPA) in the Chinese Guangxi population. This finding suggests STAT4 genetic variations contribute to MPA susceptibility and disease classification.
Area of Science:
- Genetics
- Immunology
- Rheumatology
Background:
- Microscopic polyangiitis (MPA) is a severe autoimmune disease with a known genetic component.
- The role of the STAT4 gene in MPA development remains unclear.
Purpose of the Study:
- To investigate the association between STAT4 gene polymorphisms (rs7572482, rs7574865, rs12991409) and MPA susceptibility in the Guangxi population of China.
Main Methods:
- Propensity score matching (PSM) was used to create matched case-control groups.
- High-throughput sequencing and multiplex PCR identified STAT4 single nucleotide polymorphisms (SNPs).
- Statistical analyses evaluated allele/genotype frequencies, linkage disequilibrium, haplotypes, and SNP-SNP interactions using SHEsis, SNPstats, and GMDR.
Main Results:
- The rs7574865 polymorphism showed significant differences in allele and genotype frequencies between MPA patients and controls.
- Haplotypes GGT and GTT were associated with reduced and increased MPA risk, respectively.
- Rs7574865 polymorphism significantly increased MPA risk across multiple genetic models, particularly in Han Chinese males. STAT4 rs7574865 and PTPN22 rs3811021 formed a high-risk combination. STAT4 polymorphisms correlated with renal pathology, BVAS, and ALT levels.
Conclusions:
- STAT4 gene polymorphisms are associated with MPA susceptibility and renal pathology in the Chinese Guangxi population.
- The T allele of rs7574865 is identified as a significant risk factor for MPA.
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