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Generating Transposon Insertion Libraries in Gram-Negative Bacteria for High-Throughput Sequencing
Published on: July 7, 2020
Identifying Opportunity Targets in Gram-Negative Pathogens for Infectious Disease Mitigation
Isaac A Paddy1,2, Laura M K Dassama2,3,4
1Department of Chemical and Systems Biology, Stanford School of Medicine, Stanford, California 94305-6104, United States.
Abstract:
Antimicrobial drug resistance (AMR) is a pressing global human health challenge. Humans face one of their grandest challenges as climate change expands the habitat of vectors that bear human pathogens, incidences of nosocomial infections rise, and new antibiotics discovery lags. AMR is a multifaceted problem that requires a multidisciplinary and an "all-hands-on-deck" approach. As chemical microbiologists, we are well positioned to understand the complexities of AMR while seeing opportunities for tackling the challenge. In this Outlook, we focus on vulnerabilities of human pathogens and posit that they represent "opportunity targets" for which few modulatory ligands exist. We center our attention on proteins in Gram-negative organisms, which are recalcitrant to many antibiotics because of their external membrane barrier. Our hope is to highlight such targets and explore their potential as "druggable" proteins for infectious disease mitigation. We posit that success in this endeavor will introduce new classes of antibiotics that might alleviate some of the current pressing AMR concerns.
Insights
Antimicrobial drug resistance (AMR) is a major global health threat. This study identifies vulnerabilities in Gram-negative pathogens as potential targets for developing new antibiotics to combat AMR.
Area of Science:
- Microbiology
- Chemical Biology
- Infectious Diseases
Background:
- Antimicrobial drug resistance (AMR) poses a significant global health challenge, exacerbated by climate change, rising nosocomial infections, and a lack of new antibiotic discovery.
- Addressing AMR requires a multidisciplinary approach, with chemical microbiologists playing a key role in understanding and mitigating the problem.
Purpose of the Study:
- To identify and explore vulnerabilities in human pathogens, particularly Gram-negative bacteria, as potential targets for novel antibiotic development.
- To highlight specific protein targets within Gram-negative organisms that could be modulated by small molecules to combat infectious diseases.
Main Methods:
- Focus on identifying "opportunity targets" within human pathogens, specifically proteins in Gram-negative bacteria.
- Analysis of pathogen vulnerabilities, considering the challenges posed by the outer membrane barrier of Gram-negative organisms.
Main Results:
- Gram-negative pathogens present unique challenges due to their external membrane, making them recalcitrant to many existing antibiotics.
- Specific protein targets within these pathogens have been identified as potential "druggable" sites.
Conclusions:
- Exploiting pathogen vulnerabilities, particularly in Gram-negative bacteria, offers a promising avenue for developing new classes of antibiotics.
- Targeting these identified proteins could lead to novel therapeutic strategies for infectious disease mitigation and help alleviate current AMR concerns.
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