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Updated: May 30, 2025

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Microscopic Heterogeneity Driven by Molecular Aggregation and Water Dynamics in Aqueous Osmolyte Solutions
Jiwon Seo1, Ravi Singh1, Jun-Ho Choi1
1Department of Chemistry, Gwangju Institute of Science and Technology (GIST), 123 Cheomdangwagi-ro, Buk-gu, Gwangju 61005, Republic of Korea.
Journal of Chemical Information and Modeling
|January 30, 2025
Summary
Trimethylamine N-oxide (TMAO) and trimethylurea (TMU) affect water dynamics differently. TMU
Area of Science:
- Physical Chemistry
- Biophysical Chemistry
- Computational Chemistry
Background:
- Osmolytes modulate protein stability through direct interactions or by altering water structure and dynamics.
- Understanding these mechanisms is crucial for fields ranging from biochemistry to drug development.
Purpose of the Study:
- To investigate the water dynamics in binary osmolyte-water mixtures.
- To elucidate the role of molecular aggregation and solution heterogeneity in osmolyte function.
- To differentiate the mechanisms of action between protective osmolytes (like TMAO) and denaturant osmolytes (like TMU).
Main Methods:
- Molecular Dynamics (MD) simulations were employed to study binary osmolyte-water mixtures.
- Graph theoretical analysis and spatial inhomogeneity measurements (h-values) were used to quantify solution structure.
- Analysis of hydrogen bond lifetimes between osmolytes and water molecules.
Main Results:
- Trimethylurea (TMU) readily forms aggregates, leading to microscopic heterogeneity in TMU-water mixtures.
- TMAO molecules disperse evenly, resulting in homogeneous TMAO-water mixtures.
- Water molecules in heterogeneous TMU-water mixtures exhibit less hindered translational and rotational motion compared to homogeneous TMAO-water mixtures.
- TMU exhibits weaker osmolyte-water interactions than TMAO, facilitating TMU-TMU and TMU-protein interactions.
Conclusions:
- Osmolyte action on protein stability involves both direct osmolyte-protein interactions and indirect modulation of water structure and dynamics.
- The aggregation behavior and resulting solution heterogeneity are key factors in determining water dynamics and osmolyte efficacy.
- TMU's denaturing effect is linked to its aggregation and weaker water interactions, while TMAO's protective effect may relate to its homogeneous distribution and stronger water interactions.
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