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Related Concept Videos

Genetic Screens02:46

Genetic Screens

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Genetic screens are tools used to identify genes and mutations responsible for phenotypes of interest. Genetic screens help identify individuals or a group of people at risk of developing  genetic diseases and help them with early intervention, targeted therapy, and reproductive options.
Forward genetic screens
Forward or “classical” genetic screens involve creating random mutations in an organism’s DNA using radiation, mutagens, or insertion of additional bases, which...
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Genomics02:02

Genomics

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Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
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Genetic Variation01:25

Genetic Variation

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Genetic variation is the diversity in DNA sequences found among individuals of the same species. This diversity is crucial for a species' survival because it helps organisms adapt to environmental changes. Genetic variation begins with fertilization, where an egg and sperm cell merge. Each of these cells carries 23 chromosomes, up to 46 in the fertilized egg. Chromosomes are long DNA strands that contain genes, the basic units of heredity.
Genes exist in different versions called alleles,...
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Human Genetics01:28

Human Genetics

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Human genetics provides a profound framework for understanding the interplay between genetic predispositions and human psychology. At the heart of this discipline lies the study of how genes influence physical traits, behaviors, and susceptibility to diseases. Each person carries a unique genetic code that subtly or significantly shapes their psychological and behavioral landscape.
The complex relationship between genetics and psychology is observable through common biological components such...
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Genetic Lingo01:11

Genetic Lingo

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Overview
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Genome-wide Association Studies-GWAS01:11

Genome-wide Association Studies-GWAS

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Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
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Related Experiment Video

Updated: May 29, 2025

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
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GenoSee: a novel visualization tool for graphical genotypes.

Shumpei Hashimoto1

  • 1Laboratory of Plant Breeding and Genetics, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan.

Breeding Science
|February 3, 2025
PubMed
Summary
This summary is machine-generated.

GenoSee is a new tool for visualizing genetic data, improving understanding of genomic architecture in research and breeding. It offers flexible, cross-platform graphical genotypes for complex datasets from next-generation sequencing.

Keywords:
data visualizationgenotype datagraphical genotypevisualization tools

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Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information
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Fluorescence-microscopy Screening and Next-generation Sequencing: Useful Tools for the Identification of Genes Involved in Organelle Integrity
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Area of Science:

  • Genetics
  • Bioinformatics
  • Genomic Data Visualization

Background:

  • Visualizing genotypic data is crucial for genetic research and breeding programs.
  • Next-generation sequencing (NGS) generates large datasets requiring effective visualization tools.
  • Existing graphical genotype tools lack flexibility and universal compatibility.

Purpose of the Study:

  • Introduce GenoSee, a novel visualization tool for genotypic data.
  • Address limitations of traditional visualization tools, including customization and cross-platform compatibility.
  • Enhance the accessibility and utility of genetic data visualization.

Main Methods:

  • Developed GenoSee, a user-friendly visualization tool.
  • Enabled handling of phased and non-phased variant calling data.
  • Ensured cross-platform compatibility and extensive customization options.

Main Results:

  • GenoSee provides high-quality graphical genotypes.
  • The tool offers extensive customization for diverse research needs.
  • GenoSee operates seamlessly across multiple platforms.

Conclusions:

  • GenoSee enhances understanding of genomic structures.
  • The tool advances genetic research and breeding programs.
  • GenoSee improves accessibility to complex genetic data visualization.