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Related Experiment Video

Updated: May 29, 2025

Automated and High-throughput Microbial Monoclonal Cultivation and Picking Using The Single-cell Microliter-droplet Culture Omics System

Automated and High-throughput Microbial Monoclonal Cultivation and Picking Using The Single-cell Microliter-droplet Culture Omics System

Published on: March 14, 2025

Micromix: web infrastructure for visualizing and remixing microbial 'omics data.

Regan J Hayward¹, Titus Ebbecke¹, Hanna Fricke¹

¹Helmholtz Institute for RNA-based Infection Research (HIRI), Helmholtz Centre for Infection Research (HZI), Würzburg, 97080, Germany.

|February 3, 2025

Summary

This summary is machine-generated.

Micromix is a new web platform that integrates microbial omics data, like RNA sequencing, solving data fragmentation. It enables flexible analysis and visualization for collaborative research.

Keywords:

Data visualization RNA-seq TN-seq TraDIS bacteria pathogens

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Assembly and Tracking of Microbial Community Development within a Microwell Array Platform

Assembly and Tracking of Microbial Community Development within a Microwell Array Platform

Published on: June 6, 2017

Area of Science:

Microbiology
Bioinformatics
Computational Biology

Background:

Microbial omics data (RNA sequencing, transposon-insertion sequencing) are often fragmented across spreadsheets or raw data repositories.
Lack of accessible web platforms hinders data integration and analysis.

Purpose of the Study:

To introduce Micromix, a flexible web platform for sharing and integrating diverse microbial omics data.
To provide a solution for web-accessible omics data, enabling integrative analyses.

Main Methods:

Micromix is a deployable web platform, organism-agnostic, and accepts various data formats.
It supports filtering by KEGG pathways, Gene Ontology terms, and curated gene sets.
Features a plug-in system for visualizations (heatmaps, clustering) and allows sharing of interactive sessions.

Main Results:

Demonstrates utility with case studies on Salmonella enterica and Bacteroides thetaiotaomicron.
Showcases capabilities in integrating, filtering, and visualizing functional genomic datasets.
Provides a centralized solution for microbial omics data accessibility and analysis.

Conclusions:

Micromix effectively addresses the fragmentation of microbial omics data.
The platform facilitates collaborative research through data integration, filtering, and visualization.
Micromix is a valuable tool for researchers working with diverse microbial functional genomic datasets.