Related Experiment Video
Updated: May 29, 2025

JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics
Published on: October 19, 2021
NetworkCommons: bridging data, knowledge, and methods to build and evaluate context-specific biological networks
Victor Paton1, Denes Türei1, Olga Ivanova1
1Institute for Computational Biomedicine, Heidelberg University Hospital and Heidelberg University, Heidelberg, 69120, Germany.
Summary:
We present NetworkCommons, a platform for integrating prior knowledge, omics data, and network inference methods, facilitating their usage and evaluation. NetworkCommons aims to be an infrastructure for the network biology community that supports the development of better methods and benchmarks, by enhancing interoperability and integration.
Availability And Implementation:
NetworkCommons is implemented in Python and offers programmatic access to multiple omics datasets, network inference methods, and benchmarking setups. It is a free software, available at https://github.com/saezlab/networkcommons, and deposited in Zenodo at https://doi.org/10.5281/zenodo.14719118.
More Related Videos
Related Concept Videos
Protein Networks
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
Evolutionary Relationships through Genome Comparisons
Genome Annotation and Assembly

