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Updated: May 28, 2025

Using an Automated 3D-tracking System to Record Individual and Shoals of Adult Zebrafish
Published on: December 5, 2013
Protocol for automated tracking and quantification of adult zebrafish anxiety behavior using ZebraTrack
Atanu Pramanik1, Shubham Nema2, Yogesh Bhargava2
1Department of Biotechnology, Indian Institute of Technology Hyderabad, Kandi, Sangareddy 502284, Telangana, India.
Abstract:
The open-field tank test is a well-validated technique for evaluating anxiety behavior in vertebrate animal models. However, manual behavioral analysis can be subjective and time consuming. Here, we present a protocol using ZebraTrack, an open-source ImageJ-based approach for distraction-free swimming video acquisition and automated tracking of adult zebrafish. We detail steps for mathematical calculations on 2D coordinates to extract various behavioral endpoints for anxiety-behavioral evaluation. For complete details on the use and execution of this protocol, please refer to Nema et al.1.

