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Updated: May 28, 2025

A Robust Discovery Platform for the Identification of Novel Mediators of Melanoma Metastasis
Published on: March 8, 2022
Genomic mediators of acquired resistance to immunotherapy in metastatic melanoma
Julia Schiantarelli1, Mouadh Benamar1, Jihye Park1
1Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02115, USA; Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA.
Abstract:
Although some patients with metastatic melanoma experience durable responses to immune checkpoint inhibitors (ICIs), most exhibit intrinsic or acquired resistance to these therapies. Here, we compare somatic genomic profiles from matched pre-treatment and post-resistance tumor biopsies in patients (n = 25) with metastatic melanoma who exhibited heterogeneous ICI responses to nominate additional mediators of acquired resistance. We find that several acquired resistance tumors exhibit defects in B2M or JAK1/2, consistent with prior findings. We also discover resistance-associated mutations in SEC24C and SEC24D in 3 patients. SEC24 has an essential role in the trafficking of the dsDNA sensor STING and has been linked to interferonopathies. Melanoma cells engineered to express the SEC24C mutations observed in patients exhibit diminished STING signaling, including decreased type I interferon production, antigen presentation, and a reduced capacity to activate cytotoxic T cells. This study nominates a role for aberrant STING trafficking in acquired resistance to ICIs.
Insights
Most patients with metastatic melanoma resist immune checkpoint inhibitors (ICIs). This study identifies mutations in SEC24C/D, impacting STING signaling, as a novel mechanism of acquired resistance to ICIs.
Area of Science:
- Oncology
- Immunology
- Genetics
Background:
- Immune checkpoint inhibitors (ICIs) offer durable responses in some metastatic melanoma patients.
- However, most patients develop intrinsic or acquired resistance to ICIs, necessitating identification of resistance mechanisms.
Purpose of the Study:
- To identify novel mediators of acquired resistance to ICIs in metastatic melanoma.
- To investigate the role of SEC24C/D mutations in regulating STING signaling and anti-tumor immunity.
Main Methods:
- Somatic genomic profiling of matched pre-treatment and post-resistance tumor biopsies from 25 metastatic melanoma patients.
- Functional characterization of SEC24C mutations in engineered melanoma cells.
Main Results:
- Acquired resistance tumors showed defects in B2M or JAK1/2.
- Mutations in SEC24C and SEC24D were identified in 3 patients, associated with acquired resistance.
- Engineered melanoma cells with SEC24C mutations exhibited impaired STING signaling, reduced type I interferon production, and decreased cytotoxic T-cell activation.
Conclusions:
- Aberrant STING trafficking due to SEC24C/D mutations is nominated as a novel mechanism of acquired resistance to ICIs in melanoma.
- Understanding these mechanisms could lead to new therapeutic strategies for overcoming ICI resistance.
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