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Visualization of DNA Repair Proteins Interaction by Immunofluorescence
Published on: June 26, 2020
Defective DNA repair: a putative nexus linking immunological diseases, neurodegenerative disorders, and cancer
Safaa Andarawi1,2, Ludmila Vodickova1,2,3, Anusha Uttarilli1
1Department of the Molecular Biology of Cancer, Institute of Experimental Medicine of the Czech Academy of Sciences, Videnska 1083, 142 00 Prague, Czech Republic.
Abstract:
DNA damage is a common event in cells, resulting from both internal and external factors. The maintenance of genomic integrity is vital for cellular function and physiological processes. The inadequate repair of DNA damage results in the genomic instability, which has been associated with the development and progression of various human diseases. Accumulation of DNA damage can lead to multiple diseases, such as neurodegenerative disorders, cancers, immune deficiencies, infertility, and ageing. This comprehensive review delves the impact of alterations in DNA damage response genes (DDR) and tries to elucidate how and to what extent the same traits modulate diverse major human diseases, such as cancer, neurodegenerative diseases, and immunological disorders. DDR is apparently the trait connecting important complex disorders in humans. However, the pathogenesis of the above disorders and diseases are different and lead to divergent consequences. It is important to discover the switch(es) that direct further the pathogenic process either to proliferative, or degenerative diseases. Our understanding of the influence of DNA damage on diverse human disorders may enable the development of the strategies to prevent, diagnose, and treat these diseases. In our article, we analysed publicly available GWAS summary statistics from the NHGRI-EBI GWAS Catalog and identified 12 009 single-nucleotide polymorphisms (SNPs) associated with cancer. Among these, 119 SNPs were found in DDR pathways, exhibiting significant P-values. Additionally, we identified 44 SNPs linked to various cancer types and neurodegenerative diseases (NDDs), including four located in DDR-related genes: ATM, CUX2, and WNT3. Furthermore, 402 SNPs were associated with both cancer and immunological disorders, with two found in the DDR gene RAD51B. This highlights the versatility of the DDR pathway in multifactorial diseases. However, the specific mechanisms that regulate DDR to initiate distinct pathogenic processes remain to be elucidated.
Insights
DNA damage response (DDR) genes are linked to major human diseases like cancer and neurodegenerative disorders. Understanding DDR
Area of Science:
- Genetics
- Molecular Biology
- Genomic Instability
Background:
- DNA damage is a constant cellular event, crucial for maintaining genomic integrity.
- Failure in DNA repair leads to genomic instability, contributing to diseases like cancer, neurodegeneration, and immune disorders.
- DNA damage response (DDR) pathways are implicated as a common link across diverse complex human diseases.
Purpose of the Study:
- To review the impact of alterations in DNA damage response (DDR) genes on major human diseases.
- To elucidate how DDR pathways modulate cancer, neurodegenerative diseases, and immunological disorders.
- To identify genetic variations within DDR pathways associated with multifactorial diseases.
Main Methods:
- Analysis of publicly available Genome-Wide Association Study (GWAS) summary statistics from the NHGRI-EBI GWAS Catalog.
- Identification and categorization of single-nucleotide polymorphisms (SNPs) associated with cancer, neurodegenerative diseases, and immunological disorders.
- Examination of SNP locations relative to known DNA damage response (DDR) genes and pathways.
Main Results:
- Identified 12,009 SNPs associated with cancer, with 119 located in DDR pathways.
- Found 44 SNPs linked to both cancer and neurodegenerative diseases (NDDs), including four in DDR genes (ATM, CUX2, WNT3).
- Detected 402 SNPs associated with both cancer and immunological disorders, with two in the DDR gene RAD51B, highlighting DDR's role in multifactorial diseases.
Conclusions:
- The DNA damage response (DDR) pathway is a versatile modulator of diverse complex human diseases.
- Specific mechanisms by which DDR regulates distinct pathogenic processes require further elucidation.
- Understanding DDR's influence can inform strategies for disease prevention, diagnosis, and treatment.
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