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Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples
Published on: December 22, 2014
Tongue coating microbial communities vary in children with Henoch-Schönlein purpura
Shuang Pang1, Qinghao Yan2, Qunfeng Lu3
1Department of Nursing, Institute of International Medical Science and Technology, Shanghai Sanda University, Shanghai, 201209, China.
Insights
Children with Henoch-Schönlein purpura nephritis show altered tongue coating microbiota, with reduced diversity and distinct microbial compositions compared to healthy children. These changes may offer diagnostic insights into this immune-related disease.
Area of Science:
- Microbiology
- Immunology
- Pediatrics
Background:
- Microbes are implicated in immune-related diseases.
- The role of tongue coating microbiota in Henoch-Schönlein purpura (HSP) is not fully understood.
Purpose of the Study:
- To investigate the tongue coating microbiota in children with Henoch-Schönlein purpura nephritis.
- To compare microbial diversity, composition, and function between HSP patients and healthy controls.
Main Methods:
- 16S rRNA gene sequencing of tongue coating samples from 13 children with HSP and 13 healthy controls.
- Analysis of alpha and beta diversity, microbial composition, and predicted functional pathways.
- Application of random forest algorithm for biomarker identification.
Main Results:
- Significantly lower microbial richness and diversity in children with HSP compared to controls.
- Distinct microbial community clustering and compositional differences between groups.
- Identification of five genera as potential HSP diagnostic biomarkers and altered metabolic functions.
Conclusions:
- Children with Henoch-Schönlein purpura nephritis exhibit a distinct and altered tongue coating microbiota.
- Tongue coating microbiota composition and function differ significantly between HSP patients and healthy children.
- These microbial alterations may serve as potential biomarkers for HSP diagnosis.
Abstract:
Previous research has shown that microbes play a role in immune-related diseases. Our study reveals that children with Henoch-Schönlein purpura nephritis have distinct and altered tongue coating microbiota, characterized by significant changes in species richness, diversity, and specific microbial compositions compared with healthy controls. Nevertheless, the particular involvement of tongue coating microbiota in Henoch-Schönlein Purpura remains unclear. A total of 26 children were enrolled, including 13 patients with HSP and 13 healthy children. Tongue coating samples were collected for DNA extraction and 16S rRNA gene sequencing. Alpha diversity indices, including ACE, Chao1, Shannon, and Simpson indices, revealed significantly lower richness and diversity of tongue coating microbiota in children with Henoch-Schönlein purpura compared to healthy controls. Beta diversity analysis demonstrated distinct clustering of microbial communities between HSP and healthy children, with significant compositional differences. 16S rRNA gene sequencing showed that the relative abundance of key genera, such as Veillonella and Prevotella, differed between the two groups. A random forest algorithm identified five genera as potential diagnostic biomarkers for HSP. Co-occurrence analysis revealed different hub microbes in HSP and healthy children. BugBase predicted an increased proportion of stress-tolerant bacteria in the HSP group compared to the healthy controls group. PICRUSt analysis indicated alterations in metabolic functions of tongue coating microbiota between HSP and healthy children, with 25 KEGG pathways exhibiting significant differences. Children with HSP exhibit marked differences in their tongue coating microbiota when contrasted with their healthy counterparts.
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