Enhancing brain tumor classification by integrating radiomics and deep learning features: A comprehensive study utilizing ensemble methods on MRI scans

This study aims to assess the effectiveness of combining radiomics features (RFs) with deep learning features (DFs) for classifying brain tumors-specifically Glioma, Meningioma, and Pituitary Tumor-using MRI scans and advanced ensemble learning techniques.

A total of 3064 T1-weighted contrast-enhanced brain MRI scans were analyzed. RFs were extracted using Pyradiomics, while DFs were obtained from a 3D convolutional neural network (CNN). These features were used both individually and together to train a range of machine learning models, including Support Vector Machines (SVM), Decision Trees (DT), Random Forests (RF), AdaBoost, Bagging, k-Nearest Neighbors (KNN), and Multi-Layer Perceptrons (MLP). To enhance the accuracy of these models, ensemble approaches such as Stacking, Voting, and Boosting were employed. LASSO feature selection and five-fold cross-validation were utilized to ensure the models' robustness.

The results demonstrated that combining RFs and DFs significantly improved the model's performance compared to using either feature set alone. The best performance was achieved using the combined RF + DF approach with ensemble methods, particularly Boosting, which resulted in an accuracy of 95.0%, an AUC of 0.92, a sensitivity of 88%, and a specificity of 90%. Conversely, models utilizing only RFs or DFs showed lower performance, with RFs reaching an AUC of 0.82 and DFs achieving an AUC of 0.85.

The integration of RFs and DFs, along with advanced ensemble methods, significantly improves the accuracy and reliability of brain tumor classification using MRI. This approach shows strong clinical potential, with opportunities for further enhancing generalizability and precision through additional MRI sequences and advanced machine learning techniques.