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Updated: May 27, 2025

Generation of Null Mutants to Elucidate the Role of Bacterial Glycosyltransferases in Bacterial Motility
Published on: March 11, 2022
Structural basis of undecaprenyl phosphate glycosylation leading to polymyxin resistance in Gram-negative bacteria
Khuram U Ashraf1,2, Mariana Bunoro-Batista3, T Bertie Ansell4
1Department of Microbiology, Biochemistry, and Molecular Genetics, New Jersey Medical School, Rutgers Biomedical Health Sciences, Newark, NJ, 07103, USA.
Abstract:
In Gram-negative bacteria, the enzymatic modification of Lipid A with aminoarabinose (L-Ara4N) leads to resistance against polymyxin antibiotics and cationic antimicrobial peptides. ArnC, an integral membrane glycosyltransferase, attaches a formylated form of aminoarabinose to the lipid undecaprenyl phosphate, enabling its association with the bacterial inner membrane. Here, we present cryo-electron microscopy structures of ArnC from S. enterica in apo and nucleotide-bound conformations. These structures reveal a conformational transition that takes place upon binding of the partial donor substrate. Using coarse-grained and atomistic simulations, we provide insights into substrate coordination before and during catalysis, and we propose a catalytic mechanism that may operate on all similar metal-dependent polyprenyl phosphate glycosyltransferases. The reported structures provide a new target for drug design aiming to combat polymyxin resistance.
Insights
Researchers elucidated the structure of ArnC, a key enzyme in bacterial polymyxin resistance. Understanding its mechanism offers new avenues for developing drugs to combat antibiotic resistance.
Area of Science:
- Microbiology
- Structural Biology
- Biochemistry
Background:
- Lipid A modification with aminoarabinose (L-Ara4N) in Gram-negative bacteria confers resistance to polymyxins.
- ArnC is an integral membrane glycosyltransferase essential for L-Ara4N transfer to lipid-II-P.
- Polymyxin resistance is a growing global health concern.
Purpose of the Study:
- To determine the structural basis of ArnC function.
- To elucidate the mechanism of aminoarabinose transfer by ArnC.
- To identify potential targets for novel antimicrobial drug development.
Main Methods:
- Cryo-electron microscopy (cryo-EM) was used to obtain high-resolution structures of ArnC.
- Molecular simulations (coarse-grained and atomistic) were employed to study substrate binding and catalysis.
- Biochemical assays were used to validate the proposed catalytic mechanism.
Main Results:
- Structures of ArnC from *S. enterica* were determined in apo and nucleotide-bound states.
- A conformational transition upon partial donor substrate binding was observed.
- Simulations provided insights into substrate coordination and a proposed catalytic mechanism for polyprenyl phosphate glycosyltransferases.
Conclusions:
- The structural and mechanistic insights into ArnC provide a foundation for rational drug design.
- Targeting ArnC could be a viable strategy to overcome polymyxin resistance in Gram-negative bacteria.
- This study contributes to understanding membrane-associated glycosyltransferases and antibiotic resistance mechanisms.
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