Cryo-EM reveals a new allosteric binding site at the M₅ mAChR

The M₅ muscarinic acetylcholine receptor (M₅ mAChR) represents a promising therapeutic target for neurological disorders. However, the high conservation of its orthosteric binding site has posed significant challenges for drug development. While selective positive allosteric modulators (PAMs) offer a potential solution, a structural understanding of the M₅ mAChR and its allosteric binding sites has remained limited. Here, we present a 2.8 Å cryo-electron microscopy structure of the M₅ mAChR complexed with heterotrimeric G_q protein and the agonist iperoxo, completing the active-state structural characterization of the mAChR family. To identify the binding site of M₅-selective PAMs, we implemented an integrated approach combining mutagenesis, pharmacological assays, structural biology, and molecular dynamics simulations. Our mutagenesis studies revealed that selective M₅ PAMs bind outside previously characterized M₅ mAChR allosteric sites. Subsequently, we obtained a 2.1 Å structure of M₅ mAChR co-bound with acetylcholine and the selective PAM VU6007678, revealing a novel allosteric pocket at the extrahelical interface between transmembrane domains 3 and 4 that was confirmed through mutagenesis and simulations. These findings demonstrate the diverse mechanisms of allosteric regulation in mAChRs and highlight the value of integrating pharmacological and structural approaches to identify novel allosteric binding sites.