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Genomic and In Vitro Analysis of Pediococcus pentosaceus MBBL4 Implicated Its Therapeutic Use Against Mastitis
Md Morshedur Rahman1, Naim Siddique1, Md Abu Ahsan Gilman1
1Molecular Biology and Bioinformatics Laboratory, Department of Gynecology, Obstetrics and Reproductive Health, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur, 1706, Bangladesh.
Abstract:
Pediococcus pentosaceus has the potential to be used as probiotics and biologics amid rising trends of global antimicrobial resistance (AMR) and non-communicable diseases. This study analyzed the genome of P. pentosaceus MBBL4, isolated from healthy cow milk, to assess its probiotic properties and antimicrobial efficacy. The strain was subjected to whole genome sequencing (WGS), assembly, and annotations, alongside phylogenetic and comparative genomic analyses. Additionally, carbohydrate utilization, metabolic pathways, genomic safety, and probiotic potential of MBBL4 were assessed. Its in vitro antimicrobial efficacy against mastitis pathogens was also evaluated. The WGS analysis uncovered many important probiotic traits in MBBL4. Phylogenetic analysis demonstrated a close genetic link with other 15 P. pentosaceus strains, sharing more than 99% of core genes within the pan-genome matrix. MBBL4 demonstrated extensive range of carbohydrate metabolism activity, supported by the presence of several genes encoded enzymes, including a complete elucidated lactose metabolism pathway along with 28 additional metabolic pathway modules. Notably, its genome contains regions associated with gallic acid metabolism and related genes. MBBL4 also harbored genes encoding immunity proteins like enterocin A and lactococcin, and antimicrobial compounds including penocin A, lysozymes, laccase, colicin V, and viguiepinol. Comparative analysis with other probiotic strains revealed seven novel exopolysaccharide biosynthesis proteins and one biofilm-related protein. Moreover, MBBL4 remained sensitive to 90% of the tested antibiotics and carried only a single lincosamide resistance gene (lnuA). It effectively inhibited the growth of two important bovine mastitis pathogens, Staphylococcus aureus D4C4 and Escherichia coli G1C5. These results, along with its low pathogenicity score, support the safety profile of MBBL4 and highlight its potential as bioactive natural therapeutic for mastitis and a promising probiotic candidate.
Insights
Pediococcus pentosaceus MBBL4, a cow milk isolate, shows strong probiotic potential with extensive carbohydrate metabolism and antimicrobial compound production. Its genome analysis reveals safety and efficacy against mastitis pathogens, positioning it as a novel biologic candidate.
Area of Science:
- Microbiology and Genomics
- Probiotics and Bioactive Compounds
Background:
- Rising antimicrobial resistance (AMR) and non-communicable diseases necessitate novel probiotics and biologics.
- Pediococcus pentosaceus strains are explored for their therapeutic potential.
- Understanding the genomic basis of probiotic traits is crucial for strain selection.
Purpose of the Study:
- To analyze the whole genome of Pediococcus pentosaceus MBBL4 for probiotic properties and antimicrobial efficacy.
- To assess its carbohydrate utilization, metabolic pathways, genomic safety, and potential as a therapeutic agent.
- To evaluate its in vitro antimicrobial activity against bovine mastitis pathogens.
Main Methods:
- Whole genome sequencing (WGS), assembly, and annotation of P. pentosaceus MBBL4.
- Phylogenetic and comparative genomic analyses.
- In vitro antimicrobial efficacy testing against Staphylococcus aureus and Escherichia coli.
Main Results:
- WGS revealed significant probiotic traits, including extensive carbohydrate metabolism (e.g., lactose pathway) and gallic acid metabolism.
- MBBL4 genome encodes antimicrobial compounds (enterocin A, lactococcin, penocin A) and novel exopolysaccharide biosynthesis proteins.
- The strain demonstrated sensitivity to most tested antibiotics, possessing only a single resistance gene (lnuA), and inhibited key mastitis pathogens.
- Low pathogenicity score supports a favorable safety profile.
Conclusions:
- Pediococcus pentosaceus MBBL4 possesses a robust genomic profile supporting its use as a probiotic and biologic.
- The strain exhibits promising antimicrobial efficacy against mastitis pathogens, indicating potential as a natural therapeutic.
- MBBL4 represents a valuable candidate for developing novel interventions against AMR and mastitis.
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