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Updated: May 26, 2025

Defining Substrate Specificities for Lipase and Phospholipase Candidates
Published on: November 23, 2016
Designing Target-specific Data Sets for Regioselectivity Predictions on Complex Substrates
Jules Schleinitz1, Alba Carretero-Cerdán1,2, Anjali Gurajapu1
1The Warren and Katharine Schlinger Laboratory for Chemistry and Chemical Engineering, Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States.
Machine learning models accurately predict C-H functionalization regioselectivity. Active learning strategies efficiently curate smaller datasets, outperforming random selection for complex chemical targets.
Area of Science:
- Organic Chemistry
- Computational Chemistry
- Machine Learning
Background:
- Predicting regioselectivity in C(sp3)-H functionalization is crucial for synthetic chemistry.
- Current methods often rely on intuitive extrapolation from model substrates, limiting accuracy for complex molecules.
Purpose of the Study:
- To develop machine learning models for predicting C(sp3)-H functionalization regioselectivity.
- To investigate the efficacy of active learning strategies in curating efficient datasets for model training.
- To provide a quantitative, data-driven alternative to traditional reactivity prediction methods.
Main Methods:
- Curated a dataset for dioxirane oxidations from existing literature.
- Developed and compared various acquisition functions for active learning-based dataset selection.
- Leveraged predicted reactivity and model uncertainty in active learning acquisition functions.
- Experimentally validated the workflow on complex substrates and C-H radical borylation.
Main Results:
- Active learning acquisition functions incorporating reactivity and uncertainty outperformed similarity-based methods.
- Dataset curation using acquisition functions significantly reduced the number of required data points.
- Machine-designed, smaller datasets achieved accurate predictions where larger, randomly selected datasets failed.
- The developed workflow demonstrated applicability to predicting regioselectivity in arene C-H radical borylation.
Conclusions:
- Machine learning models, particularly when trained on active learning-curated datasets, offer a powerful and efficient approach to predicting C-H functionalization regioselectivity.
- This data-driven methodology provides a quantitative and reliable alternative to traditional, often less accurate, methods for complex molecules.
- The developed workflow streamlines the prediction process, reducing experimental effort and improving accuracy.
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