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High-Throughput Transcriptome Analysis for Investigating Host-Pathogen Interactions
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Transcriptomic insights into early mechanisms underlying post-chikungunya chronic inflammatory joint disease
Mariana Severo Ramundo1,2, Guilherme Cordenonsi da Fonseca3, Felipe Ten-Caten4,5
1Departamento de Clínica Médica, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil. marianasevero@usp.br.
Scientific Reports
|February 25, 2025
Summary
Chikungunya virus infection can lead to chronic joint disease. This study identified molecular signatures in early disease phases, revealing immune dysregulation linked to persistent inflammation and potential therapeutic targets for post-chikungunya chronic inflammatory joint disease.
Area of Science:
- Virology
- Immunology
- Genomics
Background:
- Chikungunya virus (CHIKV) infection frequently causes Post-Chikungunya Chronic Inflammatory Joint Disease (pCHIKV-CIJD), impacting daily life and healthcare costs.
- Understanding the molecular basis of pCHIKV-CIJD is crucial for developing effective management strategies.
Purpose of the Study:
- To investigate the molecular mechanisms underlying the development of pCHIKV-CIJD.
- To identify molecular signatures associated with disease chronification in CHIKV-infected patients.
Main Methods:
- Analysis of RNA transcripts, including small RNAs, from whole blood of CHIKV-infected patients.
- Comparison of molecular profiles between patients who developed pCHIKV-CIJD and those who did not.
Main Results:
- Identified molecular signatures linked to immune response dysregulation in pCHIKV-CIJD development.
- Observed down-regulation of LIFR and up-regulation of hsa-miR-98-5p in the acute phase of pCHIKV-CIJD.
- Found reduced transcript levels of antiviral response genes (MMP8, LFT, DDIT4) in pCHIKV-CIJD patients, potentially promoting virus persistence.
Conclusions:
- Early molecular events, particularly immune dysregulation, are associated with pCHIKV-CIJD chronification.
- Identified potential molecular targets, including LIFR and hsa-miR-98-5p, for further investigation in pCHIKV-CIJD.
- Findings provide insights into the pathogenesis of chronic inflammatory arthritis post-CHIKV infection.

