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The Detection of Extensively Drug-Resistant Proteus mirabilis Strains Harboring Both VIM-4 and VIM-75
Moritz Fritzenwanker1,2, Jane Falgenhauer1,3, Torsten Hain1,2
1Institute of Medical Microbiology, Justus Liebig University Giessen, Schubertstrasse 81, 35392 Giessen, Germany.
Abstract:
Proteus mirabilis is a well-known opportunistic pathogen predominantly associated with urinary tract infections. It exhibits natural resistance to multiple antibiotics, including last-resort options like colistin. The emergence and spread of multidrug-resistant P. mirabilis isolates, including those producing ESBLs, AmpC cephalosporinases, and carbapenemases, are now more frequently reported. The most common carbapenemase types found in P. mirabilis are KPC-2, IMP, VIM, NDM, and OXA-48. We sequenced the genomes of three carbapenem-resistant P. mirabilis isolates harboring both blaVIM-4 and blaVIM-75 from Germany using both short-read and long-read sequencing techniques. We found that the isolates were only distantly related genetically. Both blaVIM-4 and blaVIM-75 genes were located on a class I integron, which in two cases was located on the chromosome and in one case on a plasmid. This is the first report on the complete genomes of P. mirabilis strains harboring a rare genetic element encoding both blaVIM-4 and blaVIM-75. Our results emphasize a key role for class 1 integrons in the transmission of VIM carbapenemases in P. mirabilis.
Insights
Multidrug-resistant Proteus mirabilis strains carrying rare VIM carbapenemase genes were sequenced. Class 1 integrons play a key role in transmitting these resistance genes in P. mirabilis.
Area of Science:
- Microbiology
- Genomics
- Infectious Diseases
Background:
- Proteus mirabilis is an opportunistic pathogen causing urinary tract infections.
- P. mirabilis exhibits natural resistance to many antibiotics, with increasing reports of multidrug-resistant strains.
- Carbapenemases like KPC-2, IMP, VIM, NDM, and OXA-48 are found in P. mirabilis.
Purpose of the Study:
- To sequence and analyze the complete genomes of carbapenem-resistant P. mirabilis isolates.
- To investigate the genetic elements responsible for the co-carriage of blaVIM-4 and blaVIM-75 genes.
- To understand the role of integrons in the dissemination of VIM carbapenemases in P. mirabilis.
Main Methods:
- Whole-genome sequencing using both short-read and long-read technologies.
- Comparative genomic analysis of three P. mirabilis isolates from Germany.
- Identification and characterization of carbapenemase genes and their genetic context.
Main Results:
- Three genetically distinct P. mirabilis isolates harbored both blaVIM-4 and blaVIM-75 genes.
- Both blaVIM genes were located on a class 1 integron.
- The class 1 integron was found on the chromosome in two isolates and on a plasmid in one isolate.
Conclusions:
- This is the first report detailing the complete genomes of P. mirabilis strains with the rare blaVIM-4 and blaVIM-75 genetic element.
- Class 1 integrons are crucial for the transmission of VIM carbapenemases within P. mirabilis populations.
- The findings highlight the importance of monitoring carbapenem resistance mechanisms in P. mirabilis.
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