Identification of antiviral RNAi regulators, ILF3/DHX9, recruit at ZIKV stem loop B to protect against ZIKV induced

Zhiwei Lei1,2, Yu Gu1, Ying Liu1

  • 1Guangdong Provincial Key Laboratory of Virology, Key Laboratory of Viral Pathogenesis & Infection Prevention and Control, Institute of Medical Microbiology, Jinan University, Guangzhou, China.

Nature Communications
|February 26, 2025
PubMed

Insights

Researchers identified interleukin enhancer binding factor 3 (ILF3) and DEAH-box helicase 9 (DHX9) as key regulators against Zika virus (ZIKV). Their findings suggest a new therapeutic strategy targeting flavivirus infections.

Area of Science:

  • Virology
  • Molecular Biology
  • Neuroscience

Background:

  • Zika virus (ZIKV), a Flaviviridae family member, causes severe congenital defects and neurological disorders.
  • Current therapeutic options and vaccines against ZIKV infection are limited, necessitating novel treatment strategies.

Purpose of the Study:

  • To investigate vRNA-host protein interactions at the ZIKV stem-loop B region.
  • To identify host factors regulating ZIKV replication and antiviral responses.
  • To explore a novel therapeutic approach for flavivirus infections.

Main Methods:

  • Profiling of vRNA-host protein interactomes in human neuroblastoma cells and iPSC-derived neural stem cells.
  • Functional studies involving gene ablation in brain organoids and mouse models.
  • Mechanistic investigations into RNA processing and polymerase inhibition.

Main Results:

  • Interleukin enhancer binding factor 3 (ILF3) and DEAH-box helicase 9 (DHX9) were identified as positive regulators of antiviral RNA interference against ZIKV.
  • Ablation of ILF3 exacerbated ZIKV replication and microcephaly in vivo.
  • ILF3/DHX9 enhance DICER processing of ZIKV vRNA-derived siRNAs (vsiR-1, vsiR-2), which inhibit viral polymerase activity and RNA translation.
  • A vsiR-1 mimic demonstrated efficacy in inhibiting ZIKV replication and protecting against microcephaly in vivo.

Conclusions:

  • ILF3 and DHX9 play critical roles in host antiviral defense against ZIKV.
  • Targeting vsiR-1 represents a promising therapeutic strategy for combating ZIKV and potentially other flavivirus infections.