Related Experiment Video
Updated: May 25, 2025

A Protocol for Computer-Based Protein Structure and Function Prediction
Published on: November 3, 2011
Efficient crystal structure prediction based on the symmetry principle
Yu Han1, Chi Ding1, Junjie Wang2
1National Laboratory of Solid State Microstructures, School of Physics and Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China.
Abstract:
Crystal structure prediction (CSP) is an evolving field aimed at discerning crystal structures with minimal prior information. Despite the success of various CSP algorithms, their practical applicability remains circumscribed, particularly for large and complex systems. Here, to address this challenge, we show an evolutionary structure generator within the MAGUS (Machine Learning and Graph Theory Assisted Universal Structure Searcher) framework, inspired by the symmetry principle. This generator extracts both global and local features of explored crystal structures using group and graph theory. By integrating an on-the-fly space group miner and fragment reorganizer, augmented by symmetry-kept mutation, our approach generates higher-quality initial structures, reducing the computational costs of CSP tasks. Benchmarking tests show up to fourfold performance improvements. The method also proves valid in complex phosphorus allotrope systems. Furthermore, we apply our approach to the diamond-silicon (111)-(7 × 7) surface system, identifying up to 42 metastable structures within an 18 meV Å-2 energy range, demonstrating the efficacy of our approach in navigating challenging search spaces.
More Related Videos
09:16X-ray Powder Diffraction in Conservation Science: Towards Routine Crystal Structure Determination of Corrosion Products on Heritage Art Objects
Published on: June 8, 2016
07:11Fully Autonomous Characterization and Data Collection from Crystals of Biological Macromolecules
Published on: March 22, 2019
Related Concept Videos
Ionic Crystal Structures
Most monatomic ions behave as charged spheres, and their attraction for ions of opposite charge is the same in every direction. Consequently, stable structures for ionic compounds result (1) when ions of one charge are surrounded by as many ions as possible of the opposite...
Crystal Field Theory - Tetrahedral and Square Planar Complexes
Crystal field theory (CFT) is applicable to molecules in geometries other than octahedral. In octahedral complexes, the lobes of the dx2−y2 and dz2 orbitals point directly at the ligands. For tetrahedral complexes, the d orbitals remain in place, but with only four ligands located between the axes. None of the orbitals points directly at the tetrahedral ligands. However, the dx2−y2 and dz2 orbitals (along the Cartesian axes) overlap with the ligands less than the dxy,...
Crystal Field Theory - Octahedral Complexes
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...
Structures of Solids
VSEPR Theory
Predicting Molecular Geometry