Prolyl hydroxylase domain enzymes (isoforms 1-3, PHD1-3), but not factor-inhibiting HIF-1 (FIH-1), interact with the

Akiyoshi Tamura1, Koji Kitayama1, Mutsumi Adachi1

  • 1Department of Biomedical Sciences, School of Biological and Environmental Sciences, Kwansei Gakuin University.

Insights

Prolyl hydroxylase domain enzymes (PHDs) regulate the classical nuclear factor kappa B (NF-kappa-B) pathway by decreasing I kappa B kinase (IKK) protein levels. Factor-inhibiting HIF-1 (FIH-1) does not impact this pathway.

Area of Science:

  • Molecular Biology
  • Cellular Signaling
  • Hypoxia Response

Background:

  • Nuclear factor kappa B (NF-kappa-B) is a key transcription factor regulating inflammatory and immune responses.
  • NF-kappa-B activity is primarily controlled by the I kappa B kinase (IKK) complex in the classical pathway.
  • Prolyl hydroxylase domain enzymes (PHDs) and factor-inhibiting HIF-1 (FIH-1) are oxygen-dependent regulators involved in cellular responses.

Purpose of the Study:

  • To investigate the interaction between PHDs and FIH-1 with components of the classical NF-kappa-B pathway, specifically IKK.
  • To determine the functional impact of PHDs and FIH-1 on NF-kappa-B signaling components and downstream targets.

Main Methods:

  • Immunoprecipitation assays were used to examine interactions between IKKα/β and PHD isoforms (PHD1-3).
  • Overexpression of PHD isoforms and their active site mutants was performed to assess effects on IKKα/β and IL-1β mRNA levels.
  • The impact of FIH-1 overexpression on IKKα/β and p65 protein levels was also evaluated.

Main Results:

  • PHD isoforms (PHD1-3) were found to interact with IKKα/β.
  • Overexpression of PHD1 and PHD2 significantly reduced IKKα/β protein levels, with a weaker effect observed for PHD3.
  • Active site mutations in PHDs abolished their ability to decrease IKKα/β protein levels, and FIH-1 did not affect IKKα/β or p65 levels.

Conclusions:

  • PHD enzymes directly regulate the protein levels of IKK in the classical NF-kappa-B pathway.
  • The oxygen-sensing FIH-1 protein does not appear to influence the classical NF-kappa-B signaling cascade.
  • These findings elucidate a novel regulatory mechanism linking oxygen sensing to inflammatory signaling via the PHD-IKK interaction.

Related Concept Videos

NF-κB-dependent Signaling Pathway02:26

NF-κB-dependent Signaling Pathway

The transcription factor NF-κB was discovered in 1986 in the lab of Nobel laureate Professor David Baltimore, for its interaction with the immunoglobulin light chain enhancer in B-cells. After more than three decades of study, it is now evident that NF-κB regulates the expression of over 100 genes. Most of these genes play an essential role in the innate and adaptive immune responses as well as the inflammatory responses of animals.
NF-κB-dependent Signaling Mechanism
The...
7.2K
The JAK-STAT Signaling Pathway01:20

The JAK-STAT Signaling Pathway

Several cytokine receptors have tightly bound Janus kinase or JAK proteins attached at their cytosolic tail. Small signaling molecules such as cytokines, growth hormones, or prolactins bind to the cytokine receptors and initiate their dimerization. The dimerization brings the cytosolic JAKs together that trans-phosphorylate and activates each other. The activated JAKs now phosphorylate cytosolic tails of the cytokine receptors, which serve as binding sites for adaptor proteins such as  SH2...
8.6K
Regulation of the Unfolded Protein Response01:31

Regulation of the Unfolded Protein Response

Inositol-requiring kinase one or IRE1 is the most conserved eukaryotic unfolded protein response (UPR) receptor. It is a type I transmembrane protein kinase receptor with a distinctive site-specific RNase activity. As the binding mechanics of the misfolded proteins with the N-terminal domain of IRE-1 are unclear, three binding models — direct, indirect, and allosteric -- are proposed for receptor activation. Nevertheless, it is known that once a misfolded protein associates with IRE1, it...
2.4K
Co-activators and Co-repressors02:04

Co-activators and Co-repressors

Gene transcription is regulated by the synergistic action of several proteins that form a complex at a gene regulatory site. This is observed in eukaryotes, where the regulation of gene expression is a complex process. Regulatory proteins in eukaryotes can broadly be classified into two types – regulators that bind directly to specific DNA sequences and co-regulators that associate with regulatory proteins but cannot directly bind to the DNA. These co-regulators are further divided into...
7.2K
Regulation of Nuclear Protein Sorting01:45

Regulation of Nuclear Protein Sorting

Nuclear protein sorting regulates nucleus composition and gene expression, crucial for determining the fate of a eukaryotic cell. Hence, the entry and exit of molecules across the nuclear envelope is a tightly controlled process. Nuclear protein sorting can be inhibited by one of the following ways: 1) masking cargo signal sequences, 2) modifying the nuclear receptor's affinity for cargo, 3) controlling the nuclear pore size, 4) retaining the cargo during its transit to the cytosol or the...
2.3K
Eukaryotic RNA Polymerases00:58

Eukaryotic RNA Polymerases

RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
23.2K