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Updated: May 24, 2025

Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
Published on: June 21, 2018
Real-world enrollment for a prospective clinico-genomic database using a pragmatic technology-enabled platform
Alexia Exarchos1, Ariel B Bourla2, Maneet Kaur2
1Genentech, Inc., South San Francisco, CA, USA.
A new platform enabled rapid enrollment of cancer patients in community settings for a prospective clinico-genomic database. This approach facilitates real-world biomarker discovery and evidence generation outside major academic centers.
Area of Science:
- Oncology
- Genomics
- Biomarker Discovery
Background:
- Clinico-genomic datasets are crucial for identifying predictive and prognostic cancer biomarkers.
- Historically, biomarker research infrastructure has been limited to large academic centers.
- A technology-enabled platform was developed to enable biomarker research at community-based sites.
Purpose of the Study:
- To evaluate the feasibility of a pragmatic, technology-enabled platform for creating a prospective clinico-genomic database.
- To support biomarker research in community oncology settings.
- To link real-world clinical data with tumor sequencing data.
Main Methods:
- Adults with stage IV or recurrent metastatic non-small cell lung cancer or extensive-stage small-cell lung cancer were enrolled at 23 US sites.
- Electronic health record (EHR) data were centrally processed and normalized.
- Serial blood samples were collected for circulating tumor DNA (ctDNA) genomic profiling at multiple timepoints.
Main Results:
- 944 patients were enrolled between December 2019 and May 2021, representing approximately 25% of eligible patients.
- High rates of ctDNA sample collection were achieved at baseline (87%), during treatment (67%), and at disease progression (47%).
- 35% of participants provided samples at all three timepoints.
Conclusions:
- A community-based oncology patient cohort was rapidly enrolled, establishing a real-world clinico-genomic dataset.
- This pragmatic study platform demonstrates potential for generating evidence through prospective real-world data collection.
- The platform facilitates biomarker research in diverse community settings.
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