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Updated: May 24, 2025

Identifying Caspases and their Motifs that Cleave Proteins During Influenza A Virus Infection
Published on: July 21, 2022
Caspase cleavage of influenza A virus M2 disrupts M2-LC3 interaction and regulates virion production
Carmen Figueras-Novoa1,2, Masato Akutsu3,4, Daichi Murata3,5,6
1Cell Biology of Infection Laboratory, The Francis Crick Institute, London, UK.
Abstract:
Influenza A virus (IAV) Matrix 2 protein (M2) is an ion channel, required for efficient viral entry and egress. M2 interacts with the small ubiquitin-like LC3 protein through a cytoplasmic C-terminal LC3-interacting region (LIR). Here, we report that M2 is cleaved by caspases, abolishing the M2-LC3 interaction. A crystal structure of the M2 LIR in complex with LC3 indicates the caspase cleavage tetrapeptide motif (82SAVD85) is an unstructured linear motif that does not overlap with the LIR. IAV mutant expressing a permanently truncated M2, mimicking caspase cleavage, exhibit defects in M2 plasma membrane transport, viral filament formation, and virion production. Our results reveal a dynamic regulation of the M2-LC3 interaction by caspases. This highlights the role of host proteases in regulating IAV exit, relating virion production with host cell state.
Insights
Influenza A virus M2 protein cleavage by caspases disrupts its interaction with LC3. This caspase-mediated regulation impacts viral egress and virion production, linking virus exit to host cell status.
Area of Science:
- Virology
- Molecular Biology
- Structural Biology
Background:
- Influenza A virus (IAV) Matrix 2 (M2) protein functions as an ion channel essential for viral entry and egress.
- M2 interacts with the LC3 protein via its C-terminal LC3-interacting region (LIR).
Purpose of the Study:
- To investigate the regulation of the M2-LC3 interaction by host proteases.
- To elucidate the structural basis of M2-LC3 interaction and its modulation by cleavage.
Main Methods:
- Caspase cleavage assays.
- Crystal structure determination of M2 LIR in complex with LC3.
- Analysis of IAV mutants expressing truncated M2 protein.
Main Results:
- Caspase cleavage of M2 protein abolishes the M2-LC3 interaction.
- The caspase cleavage motif (SAVD) is unstructured and distinct from the LIR.
- IAV mutants with truncated M2 show defects in plasma membrane transport, viral filament formation, and virion production.
Conclusions:
- Host caspases dynamically regulate the M2-LC3 interaction.
- Cleavage of M2 by caspases is a critical mechanism influencing IAV exit and virion production.
- This regulation connects viral particle release with the host cell's physiological state.
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