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Updated: May 24, 2025

RNA-based Reprogramming of Human Primary Fibroblasts into Induced Pluripotent Stem Cells
Published on: November 26, 2018
The miR-290 and miR-302 clusters are essential for reprogramming of fibroblasts to induced pluripotent stem cells
Julia Ye1,2,3, Ryan M Boileau1,2,3, Ronald J Parchem4
1Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California at San Francisco, San Francisco, CA 94143, United States.
Abstract:
The miR-290 and miR-302 clusters of microRNAs are highly expressed in naïve and primed pluripotent stem cells, respectively. Ectopic expression of the embryonic stem cell (ESC)-specific cell cycle regulating family of microRNAs arising from these two clusters dramatically enhances the reprogramming of both mouse and human somatic cells to induced pluripotency. Here, we used genetic knockouts to dissect the requirement for the miR-290 and miR-302 clusters during the reprogramming of mouse fibroblasts into induced pluripotent stem cells (iPSCs) with retrovirally introduced Oct4, Sox2, and Klf4. Knockout of either cluster alone did not negatively impact the efficiency of reprogramming. Resulting cells appeared identical to their ESC microRNA cluster knockout counterparts. In contrast, the combined loss of both clusters blocked the formation of iPSCs. While rare double knockout clones could be isolated, they showed a dramatically reduced proliferation rate, a persistent inability to fully silence the exogenously introduced pluripotency factors, and a transcriptome distinct from individual miR-290 or miR-302 mutant ESC and iPSCs. Taken together, our data show that miR-290 and miR-302 are essential yet interchangeable in reprogramming to the induced pluripotent state.
Insights
The miR-290 and miR-302 microRNA clusters are essential for induced pluripotency. Their combined absence blocks reprogramming, highlighting their interchangeable roles in generating induced pluripotent stem cells (iPSCs).
Area of Science:
- Stem cell biology
- Molecular and cellular biology
Background:
- MicroRNAs (miRNAs) are key regulators of gene expression.
- The miR-290 and miR-302 clusters are highly expressed in embryonic stem cells (ESCs).
- These miRNA clusters enhance the reprogramming of somatic cells to induced pluripotent stem cells (iPSCs).
Purpose of the Study:
- To investigate the specific roles of the miR-290 and miR-302 clusters in the reprogramming process.
- To determine if these clusters are essential or interchangeable for generating induced pluripotent stem cells (iPSCs).
Main Methods:
- Genetic knockouts of miR-290 and miR-302 clusters in mouse fibroblasts.
- Reprogramming using retroviral delivery of Oct4, Sox2, and Klf4.
- Analysis of reprogramming efficiency, cell proliferation, pluripotency factor silencing, and transcriptome.
Main Results:
- Individual knockout of miR-290 or miR-302 clusters did not impair reprogramming efficiency.
- Combined knockout of both clusters completely blocked iPSC formation.
- Double knockout clones exhibited reduced proliferation, incomplete silencing of reprogramming factors, and distinct transcriptomes.
Conclusions:
- The miR-290 and miR-302 clusters are essential for reprogramming somatic cells to induced pluripotency.
- These two clusters are functionally interchangeable, with either one sufficient to support reprogramming when the other is absent.
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