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A data-efficient strategy for building high-performing medical foundation models.

Yuqi Sun1, Weimin Tan1, Zhuoyao Gu1

  • 1Shanghai Key Laboratory of Intelligent Information Processing, School of Computer Science, Fudan University, Shanghai, China.

Nature Biomedical Engineering
|March 5, 2025
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Summary
This summary is machine-generated.

Synthetic data generation enhances medical foundation models. Using synthetic retinal images, researchers built a high-performing model with less real-world data, improving efficiency and generalization for tasks like diabetic retinopathy grading.

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Area of Science:

  • Artificial Intelligence
  • Medical Imaging
  • Computer Vision

Background:

  • Collecting large medical datasets for foundation models is costly, time-consuming, and raises privacy issues.
  • Existing medical foundation models require extensive real-world data for pretraining.

Purpose of the Study:

  • To investigate the efficacy of synthetic data in training high-performing medical foundation models.
  • To develop a data-efficient approach for pretraining medical foundation models.

Main Methods:

  • Pretrained a retinal foundation model using approximately one million synthetic retinal images.
  • Compared the synthetic data-trained model with a model trained on real-world data (RETFound), using only 16.7% of the real images.
  • Evaluated model performance across nine public datasets and four diagnostic tasks.
  • Validated the approach by building a tuberculosis detection classifier on chest X-ray images.

Main Results:

  • The data-efficient model achieved performance comparable to or better than RETFound across multiple datasets and tasks.
  • For diabetic retinopathy grading, the model utilized only 40% of the expert-annotated data compared to RETFound.
  • Demonstrated generalizability by successfully training a tuberculosis detection classifier.

Conclusions:

  • Synthetic data generated via disease label conditioning can effectively train high-performing medical foundation models.
  • This data-efficient strategy enhances model performance and generalization while mitigating data acquisition challenges.
  • Text-conditioned synthetic data generation shows promise for advancing medical AI.