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Generalizable deep learning framework for 3D medical image segmentation using limited training data.

Tobias Ekman1,2, Arthur Barakat3,4, Einar Heiberg3,4,5

  • 1Department of Medical Imaging and Physiology, Lund University, Lund, Sweden. tobias.ekman88@gmail.com.

3D Printing in Medicine
|March 5, 2025
PubMed
Summary

This study presents a deep learning framework for 3D medical image segmentation that requires minimal data and computational resources. It achieves high accuracy across diverse clinical applications, improving accessibility in healthcare.

Keywords:
3D printingArtificial intelligenceDeep learningMachine learningSegmentation

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Area of Science:

  • Medical Imaging
  • Computer-Aided Diagnosis
  • Artificial Intelligence in Medicine

Background:

  • Medical image segmentation is crucial for clinical applications like 3D printing and surgical planning.
  • Manual segmentation is time-consuming and prone to variability.
  • Deep learning offers automation but typically requires large datasets and significant GPU power.

Purpose of the Study:

  • To introduce a robust deep learning framework for 3D medical segmentation.
  • To enable high-performance segmentation with limited data and computational resources.
  • To demonstrate applicability across diverse clinical scenarios.

Main Methods:

  • Development of a novel deep learning framework for 3D medical image segmentation.
  • Training and validation on a small number of subjects across various anatomical structures.
  • Utilizing a minimal set of hyper-parameters and augmentation settings.

Main Results:

  • Achieved an average Dice score of 92% (SD = ±0.06) across diverse organs and tissues.
  • Demonstrated high performance in six distinct clinical applications (orthopedics, orbital, mandible CT, cardiac CT, fetal MRI, lung CT).
  • Framework proved effective even with limited training data and computational resources.

Conclusions:

  • The proposed deep learning framework offers a resource-efficient solution for 3D medical segmentation.
  • It overcomes limitations of traditional deep learning methods, enhancing accessibility in healthcare.
  • The approach facilitates advanced visualization, surgical planning, and 3D printing in clinical practice.