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Performing Data Mining And Integrative Analysis Of Biomarker in Breast Cancer Using Multiple Publicly Accessible Databases
Published on: May 17, 2019
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Enhancing breast cancer prediction through stacking ensemble and deep learning integration
1Department of Management Information Systems, Faculty of Economics and Administrative Sciences, Karadeniz Technical University, Trabzon, Turkey.
Peerj. Computer Science
|March 10, 2025
Summary
This study enhances breast cancer diagnosis by integrating machine learning ensemble models with deep learning models. The stacking ensemble technique, particularly using CNN as a meta-predictor, improves accuracy and efficiency for early detection.
Area of Science:
- Oncology
- Medical Informatics
- Artificial Intelligence
Background:
- Breast cancer is a significant global health concern, necessitating advancements in early detection.
- Machine learning and deep learning are increasingly vital for improving cancer diagnosis accuracy and efficiency.
Purpose of the Study:
- To evaluate ensemble and deep learning models for breast cancer diagnosis using stacking ensemble techniques.
- To enhance breast cancer prediction accuracy and efficiency through integrated modeling.
Main Methods:
- Evaluated ensemble methods (Random Forest, XGBoost, LightGBM, ExtraTrees, HistGradientBoosting, AdaBoost, GradientBoosting, CatBoost) for breast cancer diagnosis.
- Analyzed deep learning models (CNN, RNN, GRU, BILSTM, LSTM) as meta-predictors.
- Implemented stacking ensemble methodology integrating base predictors with a CNN meta-predictor.
Main Results:
- Convolutional Neural Network (CNN) demonstrated high accuracy and rapid training times, suitable for real-time applications.
- The stacking integration model combining LightGBM, ExtraTrees, CatBoost with CNN achieved high accuracy, F1 score, and ROC AUC.
- The proposed method significantly reduced training times compared to individual models.
Conclusions:
- The stacking ensemble model integrating ensemble methods with CNN offers a powerful tool for enhancing breast cancer diagnosis.
- This approach shows significant potential for healthcare decision support systems, improving diagnostic accuracy and efficiency.
- The findings provide valuable insights for optimizing breast cancer diagnosis and management strategies.

