The Molecular Monitoring of an Invasive Freshwater Fish, Brown Trout (Salmo trutta), Using Real-Time PCR Assay and...

Salmo trutta, commonly known as brown trout, is an invasive species that has established itself in various regions, including South Korea, where it poses ecological risks to native freshwater fish populations. To enable natural habitat restoration, S. trutta needs to be monitored, but traditional monitoring techniques are associated with several limitations. Therefore, in this study, we aimed to apply a sensitive and specific real-time PCR (qPCR) assay using a set of primers and a hydrolysis probe specific to the mitochondrial cytochrome b gene of S. trutta. Environmental DNA (eDNA) was extracted from river-water samples collected downstream of the Soyang Reservoir and around the Uiam Reservoir between January and March 2023. The qPCR assays successfully detected S. trutta eDNA in 11 of the 24 samples, with high concentrations found upstream and downstream of the Soyang River. Our results demonstrate the effectiveness of qPCR assay for the S. trutta detection in aquatic environments and highlight its potential for monitoring the spread of this species, especially in areas that are difficult to survey using traditional methods. This molecular approach offers a more efficient tool for S. trutta population management, mitigating its impact on native biodiversity.