MsbZIP55 regulates salinity tolerance by modulating melatonin biosynthesis in alfalfa

Soil salinity is a severe abiotic stress that damages plant growth and development. As an antioxidant and free radical scavenger, melatonin is well known for helping plants survive abiotic conditions, including salinity stress. Here, we report that the salt-related gene MsSNAT1, encoding a rate-limiting melatonin biosynthesis enzyme, is located in the chloroplast and contributes to salinity stress tolerance in alfalfa. We found that the MsSNAT1 overexpressing alfalfa lines exhibited higher endogenous melatonin levels and increased tolerance to salt stress by promoting antioxidant systems and improving ion homeostasis. Furthermore, through a combination of transcriptome sequencing, dual-luciferase assays and transgenic analysis, we identified that the basic leucine zipper (bZIP) transcription factor, MsbZIP55, is associated with salt response and MsSNAT1 expression. EMSA analysis and ChIP-qPCR uncovered that MsbZIP55 can recognize and directly bind to the MsSNAT1 promoter in vitro and in vivo. MsbZIP55 acts as a negative regulator of MsSNAT1 expression, thereby reducing melatonin biosynthesis. Morphological analysis revealed that overexpressing MsbZIP55 conferred salt sensitivity to transgenic alfalfa through a higher Na⁺/K⁺ ratio and lower antioxidant activities, which could be alleviated by applying exogenous melatonin. Silencing of MsbZIP55 by RNA interference in alfalfa resulted in higher expression of MsSNAT1 and promoted salt tolerance by enhancing the antioxidant system enzyme activities and ion homeostasis. Our findings indicate that the MsbZIP55-MsSNAT1 module plays a crucial role in regulating melatonin biosynthesis in alfalfa while facilitating protection against salinity stress. These results shed light on the regulatory mechanism of melatonin biosynthesis related to the salinity stress response in alfalfa.